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v1.7.4 #149

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4 changes: 2 additions & 2 deletions DESCRIPTION
Original file line number Diff line number Diff line change
Expand Up @@ -10,8 +10,8 @@ Description: Provides easier interaction with
format and manages throttling by 'Socrata'.
Users can upload data to Socrata portals directly
from R.
Version: 1.7.3-2
Date: 2017-06-22
Version: 1.7.4-5
Date: 2017-12-12
Author: Hugh Devlin, Ph. D., Tom Schenk, Jr., and John Malc
Maintainer: "Tom Schenk Jr." <[email protected]>
Depends:
Expand Down
6 changes: 6 additions & 0 deletions NAMESPACE
Original file line number Diff line number Diff line change
Expand Up @@ -8,12 +8,18 @@ export(read.socrata)
export(validateUrl)
export(write.socrata)
importFrom(httr,GET)
importFrom(httr,POST)
importFrom(httr,PUT)
importFrom(httr,add_headers)
importFrom(httr,authenticate)
importFrom(httr,build_url)
importFrom(httr,content)
importFrom(httr,http_status)
importFrom(httr,parse_url)
importFrom(httr,stop_for_status)
importFrom(httr,user_agent)
importFrom(jsonlite,fromJSON)
importFrom(mime,guess_type)
importFrom(plyr,rbind.fill)
importFrom(utils,packageVersion)
importFrom(utils,read.csv)
59 changes: 53 additions & 6 deletions R/RSocrata.R
Original file line number Diff line number Diff line change
Expand Up @@ -19,6 +19,38 @@ logMsg <- function(s) {
cat(format(Sys.time(), "%Y-%m-%d %H:%M:%OS3 "), as.character(sys.call(-1))[1], ": ", s, '\n', sep='')
}

#' Compiles the information to be used in HTTP headers
#'
#' Grabs the headers (RSocrata version, OS, and R version) to be used while
#' making HTTP requests with Socrata. This enables Socrata's team to track
#' the usage of RSocrata.
#' @return a string
#' @importFrom utils packageVersion
#' @author Tom Schenk Jr \email{tom.schenk@@cityofchicago.org}
#' @noRd
fetch_user_agent <- function() {
rSocrataVersion <- packageVersion("RSocrata")
operatingSystem <- Sys.info()[["sysname"]]
operatingSystemVersion <- paste(Sys.info()[["release"]], Sys.info()[["version"]])
rVersion <- paste0(R.version$major,
".",
R.version$minor,
ifelse( # Checks if version has status, e.g., "rev"
R.version$status == "",
"",
paste0("-",R.version$status))
)

header <- paste0( "RSocrata/",
rSocrataVersion, " (",
operatingSystem, "/",
operatingSystemVersion, "; ",
"R/", rVersion,
")"
)
return(header)
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I would put the call to httr::user_agent here, but there is no error as it stands.
e.g. something like this:

result <- httr::user_agent(header)
return(result)

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I'm a little less inclined for this change. If we make the change, the call from GET would be:

GET( url, fetch_user_agent() )

But, I think I prefer the literal call-out in the current method:

GET( url, user_agent( fetch_user_agent() ) )

}

#' Checks the validity of the syntax for a potential Socrata dataset Unique Identifier, also known as a 4x4.
#'
#' Will check the validity of a potential dataset unique identifier
Expand Down Expand Up @@ -79,6 +111,16 @@ validateUrl <- function(url, app_token) {
parsedUrl$query <- NULL
}

# if /data appended to URL, remove it
pathLength <- nchar(parsedUrl$path)
if(substr(parsedUrl$path, pathLength - 4, pathLength) == '/data') {
parsedUrl$path <- substr(parsedUrl$path, 1, pathLength - 5)
}
if(substr(parsedUrl$path, pathLength - 5, pathLength) == '/data/') {
parsedUrl$path <- substr(parsedUrl$path, 1, pathLength - 6)
}


fourByFour <- basename(parsedUrl$path)
if(!isFourByFour(fourByFour))
stop(fourByFour, " is not a valid Socrata dataset unique identifier.")
Expand Down Expand Up @@ -162,15 +204,15 @@ no_deniro <- function(x) {
#' @param email - Optional. The email to the Socrata account with read access to the dataset.
#' @param password - Optional. The password associated with the email to the Socrata account
#' @return httr response object
#' @importFrom httr http_status GET content stop_for_status
#' @importFrom httr http_status GET content stop_for_status user_agent
#' @author Hugh J. Devlin, Ph. D. \email{Hugh.Devlin@@cityofchicago.org}
#' @noRd
getResponse <- function(url, email = NULL, password = NULL) {

if(is.null(email) && is.null(password)){
response <- httr::GET(url)
response <- httr::GET(url, httr::user_agent(fetch_user_agent()))
} else { # email and password are not NULL
response <- httr::GET(url, httr::authenticate(email, password))
response <- httr::GET(url, httr::authenticate(email, password), httr::user_agent(fetch_user_agent()))
}

# status <- httr::http_status(response)
Expand Down Expand Up @@ -355,15 +397,18 @@ read.socrata <- function(url, app_token = NULL, email = NULL, password = NULL,
#' # Check schema definition for metadata
#' attributes(df)
#' @importFrom jsonlite fromJSON
#' @importFrom httr parse_url
#' @importFrom httr GET build_url parse_url content user_agent
#' @export
ls.socrata <- function(url) {
url <- as.character(url)
parsedUrl <- httr::parse_url(url)
if(is.null(parsedUrl$scheme) | is.null(parsedUrl$hostname))
stop(url, " does not appear to be a valid URL.")
parsedUrl$path <- "data.json"
data_dot_json <- jsonlite::fromJSON(httr::build_url(parsedUrl))
#Download data
response <- httr::GET(httr::build_url(parsedUrl), httr::user_agent(fetch_user_agent()))
data_dot_json <- jsonlite::fromJSON(content(response, "text"))

data_df <- as.data.frame(data_dot_json$dataset)
# Assign Catalog Fields as attributes
attr(data_df, "@context") <- data_dot_json$`@context`
Expand All @@ -389,20 +434,22 @@ ls.socrata <- function(url) {
#' @param password - password associated with Socrata account (will need write access to dataset)
#' @param app_token - optional app_token associated with Socrata account
#' @return httr a response object
#' @importFrom httr GET
#' @importFrom httr GET POST PUT authenticate user_agent add_headers
#'
#' @noRd
checkUpdateResponse <- function(json_data_to_upload, url, http_verb, email, password, app_token = NULL) {
if(http_verb == "POST"){
response <- httr::POST(url,
body = json_data_to_upload,
httr::authenticate(email, password),
httr::user_agent(fetch_user_agent()),
httr::add_headers("X-App-Token" = app_token,
"Content-Type" = "application/json")) #, verbose())
} else if(http_verb == "PUT"){
response <- httr::PUT(url,
body = json_data_to_upload,
httr::authenticate(email, password),
httr::user_agent(fetch_user_agent()),
httr::add_headers("X-App-Token" = app_token,
"Content-Type" = "application/json")) # , verbose())
}
Expand Down
4 changes: 3 additions & 1 deletion man/ls.socrata.Rd

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50 changes: 28 additions & 22 deletions tests/testthat/test-all.R
Original file line number Diff line number Diff line change
Expand Up @@ -234,13 +234,16 @@ test_that("Read URL provided by data.json from ls.socrata() - JSON", {
expect_equal(9, ncol(df), label="columns")
})

test_that("Read data with missing dates", { # See issue #24 & #27
# Query below will pull Boston's 311 requests from early July 2011. Contains NA dates.
df <- read.socrata("https://data.cityofboston.gov/resource/awu8-dc52.csv?$where=case_enquiry_id< 101000295717")
expect_equal(99, nrow(df), label="rows")
na_time_rows <- df[is.na(df$TARGET_DT), ]
expect_equal(33, length(na_time_rows), label="rows with missing TARGET_DT dates")
})
# This test is commented out because of issue #137 as a temporary work-around.
# Test should be re-enabled in the future with a work-around.
#
# test_that("Read data with missing dates", { # See issue #24 & #27
# # Query below will pull Boston's 311 requests from early July 2011. Contains NA dates.
# df <- read.socrata("https://data.cityofboston.gov/resource/awu8-dc52.csv?$where=case_enquiry_id< 101000295717")
# expect_equal(99, nrow(df), label="rows")
# na_time_rows <- df[is.na(df$TARGET_DT), ]
# expect_equal(33, length(na_time_rows), label="rows with missing TARGET_DT dates")
# })

test_that("format is not supported", {
# Unsupported data formats
Expand Down Expand Up @@ -419,6 +422,17 @@ test_that("incorrect API Query Human Readable", {
expect_equal(9, ncol(df), label="columns")
})

context("URL suffixes from Socrata are handled")

test_that("Handle /data suffix", {
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Since we're only testing the ability to correctly parse URLs that end in data or data/ I would make the check just check that rather than checking the entire download process.

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I'm inclined to agree. Can be a later touch-up.

/cc @nicklucius

df1 <- read.socrata('https://soda.demo.socrata.com/dataset/USGS-Earthquake-Reports/4334-bgaj/data')
expect_equal(1007, nrow(df1), label="rows")
expect_equal(9, ncol(df1), label="columns")
df2 <- read.socrata('https://soda.demo.socrata.com/dataset/USGS-Earthquake-Reports/4334-bgaj/data/')
expect_equal(1007, nrow(df2), label="rows")
expect_equal(9, ncol(df2), label="columns")
})

context("ls.socrata functions correctly")

test_that("List datasets available from a Socrata domain", {
Expand Down Expand Up @@ -478,14 +492,11 @@ test_that("add a row to a dataset", {
df_in <- data.frame(x,y)

# write to dataset
write.socrata(df_in,datasetToAddToUrl,"UPSERT",socrataEmail,socrataPassword)

# read from dataset and store last (most recent) row for comparisons / tests
df_out <- read.socrata(url = datasetToAddToUrl, email = socrataEmail, password = socrataPassword)
df_out_last_row <- tail(df_out, n=1)
res <- write.socrata(df_in,datasetToAddToUrl,"UPSERT",socrataEmail,socrataPassword)

# Check that the dataset was written without error
expect_equal(res$status_code, 200L)

expect_equal(df_in$x, as.numeric(df_out_last_row$x), label = "x value")
expect_equal(df_in$y, as.numeric(df_out_last_row$y), label = "y value")
})


Expand All @@ -498,15 +509,10 @@ test_that("fully replace a dataset", {
df_in <- data.frame(x,y)

# write to dataset
write.socrata(df_in,datasetToReplaceUrl,"REPLACE",socrataEmail,socrataPassword)

# read from dataset for comparisons / tests
df_out <- read.socrata(url = datasetToReplaceUrl, email = socrataEmail, password = socrataPassword)
res <- write.socrata(df_in,datasetToReplaceUrl,"REPLACE",socrataEmail,socrataPassword)

expect_equal(ncol(df_in), ncol(df_out), label="columns")
expect_equal(nrow(df_in), nrow(df_out), label="rows")
expect_equal(df_in$x, as.numeric(df_out$x), label = "x values")
expect_equal(df_in$y, as.numeric(df_out$y), label = "y values")
# Check that the dataset was written without error
expect_equal(res$status_code, 200L)
})


Expand Down