fix comments

CenterForMedicalGeneticsGhent · Mar 24, 2021 · b878a0b · b878a0b
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diff --git a/README.md b/README.md
@@ -41,7 +41,7 @@ conda install -f -c conda-forge -c bioconda wisecondorx
 ### Running WisecondorX
 
 There are three main stages (converting, reference creating and predicting) when using WisecondorX:  
-- Convert reads to .npz files (for both reference and test samples)  
+- Convert aligned reads to .npz files (for both reference and test samples)
 - Create a reference (using reference .npz files)  
     - **Important notes**
         - Automated gender prediction, required to consistently analyze sex chromosomes, is based on a Gaussian mixture 

diff --git a/wisecondorX/convert_tools.py b/wisecondorX/convert_tools.py
@@ -7,7 +7,7 @@
 import sys
 
 '''
-Converts reads file to numpy array by transforming
+Converts aligned reads file to numpy array by transforming
 individual reads to counts per bin.
 '''
 
@@ -38,7 +38,7 @@ def convert_reads(args):
     larp = -1
     larp2 = -1
 
-    logging.info('Converting reads ... This might take a while ...')
+    logging.info('Converting aligned reads ... This might take a while ...')
 
     for index, chr in enumerate(reads_file.references):