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CamilaDuitama/README.md

Hola 👋

I am Camila Duitama González

  • 🧬👩🏽‍💻I am a bioinformatician doing a postdoc in the Sequence Bioinformatics group from Institut Pasteur working under the supervision of Dr. Rayan Chikhi and Dr. Hugues Richard.

  • My latest work is muset, a software for generating an abundance unitig matrix from a collection of input samples (in FASTA/Q format).

  • 🧹🦷 I did my PhD on the development of algorithms that used machine learning and bloom filters on k-mer profiles to quantify and remove the contamination of ancient metagenomic data (see decOM and aKmerBroom ). My job was funded by the Paris AI Research Institute (PRAIRIE).

  • ✨ Pronouns: She/Her

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  1. decOM decOM Public

    🗑️🦷 decOM 🦷🗑️

    Python 5 2

  2. aKmerBroom aKmerBroom Public

    🧹🦷 aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets

    Python 4 2

  3. muset muset Public

    Forked from rvicedomini/muset

    MUSET. Set of utilities for the construction of abundance unitig matrices from sequencing data

    C++ 3