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Clean and update scripts to work with new events logger function. #127

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All of the GPU scripts are now updated to work with the new events logger function. Most scripts now also work for SHOC by passing -b shoc to the script.

The option -i is removed in favor of just passing the input directory.
./script.py -i input-dir/ -> ./script.py input-dir/

Currently require more review and testing.

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