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base.merge.tasks.list

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Chris Churas edited this page Dec 16, 2016 · 5 revisions

This is the configuration file for the merge tasks and has this format:

[DEFAULT]
KEY = VALUE

[SECTION]
KEY = VALUE
Described below are the common keys in the [DEFAULT] section

  • mergetilesbin -- Full path to mergetiles.py script that performs the merge

  • images Full path to input image directory. It is prepended to inputimagedir path for the tasks under the [SECTION] part of configuration.

  • jobdir Full path to the job directory containing this configuration file. It is prepended to outputimage and overlayoutputimage path for the tasks under the [SECTION] part of configuration.

  • cluster Denotes the cluster this configuration is setup for (Gordon, Comet, Rocce)

Described below are the common keys in the [SECTION] section

NOTE: In a configuration file SECTION is replaced with a number (ie 1, 2, 3...) known as a task id and corresponds to an individual merge task.

  • inputimagedir Relative path to directory containing tiles generated by CHM tasks. The value of jobdir/chmrun is prepended to this path.

  • outputimage Relative path for destination of merged probability map. The value of jobdir/chmrun is prepended to this path.

  • overlayoutputimage Relative path for destination of merged probability map overlayed on top of original input image. The value of jobdir/chmrun is prepended to this path.

Example:

[DEFAULT]
mergetilesbin = /home/foo/.local/bin/mergetiles.py
images = /foo/images
jobdir = /foo/run1
cluster = comet

[1]
inputimagedir = tiles/bin1-3view-final.1438.png
outputimage = probmaps/bin1-3view-final.1438.png
overlayoutputimage = overlaymaps/bin1-3view-final.1438.png

[2]
inputimagedir = tiles/bin1-3view-final.1444.png
outputimage = probmaps/bin1-3view-final.1444.png
overlayoutputimage = overlaymaps/bin1-3view-final.1444.png
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