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Automated update of docs for v1.1.8 release.
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github-merge-queue[bot] committed Jan 12, 2024
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Expand Up @@ -58,7 +58,7 @@ <h1 class="modulename">

<label class="view-source-button" for="mod-phdi-view-source"><span>View Source</span></label>

<div class="pdoc-code codehilite"><pre><span></span><span id="L-1"><a href="#L-1"><span class="linenos">1</span></a><span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;1.1.7&quot;</span>
<div class="pdoc-code codehilite"><pre><span></span><span id="L-1"><a href="#L-1"><span class="linenos">1</span></a><span class="n">__version__</span> <span class="o">=</span> <span class="s2">&quot;1.1.8&quot;</span>
</span></pre></div>


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Expand Up @@ -72,35 +72,35 @@ <h1 class="modulename">

</div>
<a class="headerlink" href="#download_from_fhir_export_response"></a>
<div class="pdoc-code codehilite"><pre><span></span><span id="download_from_fhir_export_response-10"><a href="#download_from_fhir_export_response-10"><span class="linenos">10</span></a><span class="k">def</span> <span class="nf">download_from_fhir_export_response</span><span class="p">(</span>
</span><span id="download_from_fhir_export_response-11"><a href="#download_from_fhir_export_response-11"><span class="linenos">11</span></a> <span class="n">export_response</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span>
</span><span id="download_from_fhir_export_response-12"><a href="#download_from_fhir_export_response-12"><span class="linenos">12</span></a> <span class="n">cred_manager</span><span class="p">:</span> <span class="n">AzureCredentialManager</span><span class="p">,</span>
</span><span id="download_from_fhir_export_response-13"><a href="#download_from_fhir_export_response-13"><span class="linenos">13</span></a><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Iterator</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">TextIO</span><span class="p">]]:</span>
</span><span id="download_from_fhir_export_response-14"><a href="#download_from_fhir_export_response-14"><span class="linenos">14</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
</span><span id="download_from_fhir_export_response-15"><a href="#download_from_fhir_export_response-15"><span class="linenos">15</span></a><span class="sd"> Accepts the export response content as specified here:</span>
</span><span id="download_from_fhir_export_response-16"><a href="#download_from_fhir_export_response-16"><span class="linenos">16</span></a><span class="sd"> https://hl7.org/fhir/uv/bulkdata/export/index.html#response---complete-status</span>
</span><span id="download_from_fhir_export_response-17"><a href="#download_from_fhir_export_response-17"><span class="linenos">17</span></a>
</span><span id="download_from_fhir_export_response-18"><a href="#download_from_fhir_export_response-18"><span class="linenos">18</span></a><span class="sd"> Loops through the &quot;output&quot; array and yields the resource_type (e.g., Patient)</span>
</span><span id="download_from_fhir_export_response-19"><a href="#download_from_fhir_export_response-19"><span class="linenos">19</span></a><span class="sd"> along with TextIO wrapping ndjson content.</span>
</span><span id="download_from_fhir_export_response-20"><a href="#download_from_fhir_export_response-20"><span class="linenos">20</span></a>
</span><span id="download_from_fhir_export_response-21"><a href="#download_from_fhir_export_response-21"><span class="linenos">21</span></a><span class="sd"> :param export_response: A dictionary holding the final export response.</span>
</span><span id="download_from_fhir_export_response-22"><a href="#download_from_fhir_export_response-22"><span class="linenos">22</span></a><span class="sd"> :param cred_manager: The credential manager used to authenticate to the</span>
</span><span id="download_from_fhir_export_response-23"><a href="#download_from_fhir_export_response-23"><span class="linenos">23</span></a><span class="sd"> storage account.</span>
</span><span id="download_from_fhir_export_response-24"><a href="#download_from_fhir_export_response-24"><span class="linenos">24</span></a><span class="sd"> :return: An iterator of tuples. Each tuple is comprised of:</span>
</span><span id="download_from_fhir_export_response-25"><a href="#download_from_fhir_export_response-25"><span class="linenos">25</span></a>
</span><span id="download_from_fhir_export_response-26"><a href="#download_from_fhir_export_response-26"><span class="linenos">26</span></a><span class="sd"> * FHIR resource type (str)</span>
</span><span id="download_from_fhir_export_response-27"><a href="#download_from_fhir_export_response-27"><span class="linenos">27</span></a><span class="sd"> * Export file content (io.TextIO)</span>
</span><span id="download_from_fhir_export_response-28"><a href="#download_from_fhir_export_response-28"><span class="linenos">28</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="download_from_fhir_export_response-29"><a href="#download_from_fhir_export_response-29"><span class="linenos">29</span></a> <span class="c1"># TODO: Handle error array that could be contained in the response content.</span>
</span><span id="download_from_fhir_export_response-30"><a href="#download_from_fhir_export_response-30"><span class="linenos">30</span></a>
</span><span id="download_from_fhir_export_response-31"><a href="#download_from_fhir_export_response-31"><span class="linenos">31</span></a> <span class="k">for</span> <span class="n">export_entry</span> <span class="ow">in</span> <span class="n">export_response</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;output&quot;</span><span class="p">,</span> <span class="p">[]):</span>
</span><span id="download_from_fhir_export_response-32"><a href="#download_from_fhir_export_response-32"><span class="linenos">32</span></a> <span class="n">resource_type</span> <span class="o">=</span> <span class="n">export_entry</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">)</span>
</span><span id="download_from_fhir_export_response-33"><a href="#download_from_fhir_export_response-33"><span class="linenos">33</span></a> <span class="n">blob_url</span> <span class="o">=</span> <span class="n">export_entry</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;url&quot;</span><span class="p">)</span>
</span><span id="download_from_fhir_export_response-34"><a href="#download_from_fhir_export_response-34"><span class="linenos">34</span></a>
</span><span id="download_from_fhir_export_response-35"><a href="#download_from_fhir_export_response-35"><span class="linenos">35</span></a> <span class="k">yield</span> <span class="p">(</span>
</span><span id="download_from_fhir_export_response-36"><a href="#download_from_fhir_export_response-36"><span class="linenos">36</span></a> <span class="n">resource_type</span><span class="p">,</span>
</span><span id="download_from_fhir_export_response-37"><a href="#download_from_fhir_export_response-37"><span class="linenos">37</span></a> <span class="n">_download_export_blob</span><span class="p">(</span><span class="n">blob_url</span><span class="o">=</span><span class="n">blob_url</span><span class="p">,</span> <span class="n">cred_manager</span><span class="o">=</span><span class="n">cred_manager</span><span class="p">),</span>
</span><span id="download_from_fhir_export_response-38"><a href="#download_from_fhir_export_response-38"><span class="linenos">38</span></a> <span class="p">)</span>
<div class="pdoc-code codehilite"><pre><span></span><span id="download_from_fhir_export_response-12"><a href="#download_from_fhir_export_response-12"><span class="linenos">12</span></a><span class="k">def</span> <span class="nf">download_from_fhir_export_response</span><span class="p">(</span>
</span><span id="download_from_fhir_export_response-13"><a href="#download_from_fhir_export_response-13"><span class="linenos">13</span></a> <span class="n">export_response</span><span class="p">:</span> <span class="nb">dict</span><span class="p">,</span>
</span><span id="download_from_fhir_export_response-14"><a href="#download_from_fhir_export_response-14"><span class="linenos">14</span></a> <span class="n">cred_manager</span><span class="p">:</span> <span class="n">AzureCredentialManager</span><span class="p">,</span>
</span><span id="download_from_fhir_export_response-15"><a href="#download_from_fhir_export_response-15"><span class="linenos">15</span></a><span class="p">)</span> <span class="o">-&gt;</span> <span class="n">Iterator</span><span class="p">[</span><span class="n">Tuple</span><span class="p">[</span><span class="nb">str</span><span class="p">,</span> <span class="n">TextIO</span><span class="p">]]:</span>
</span><span id="download_from_fhir_export_response-16"><a href="#download_from_fhir_export_response-16"><span class="linenos">16</span></a><span class="w"> </span><span class="sd">&quot;&quot;&quot;</span>
</span><span id="download_from_fhir_export_response-17"><a href="#download_from_fhir_export_response-17"><span class="linenos">17</span></a><span class="sd"> Accepts the export response content as specified here:</span>
</span><span id="download_from_fhir_export_response-18"><a href="#download_from_fhir_export_response-18"><span class="linenos">18</span></a><span class="sd"> https://hl7.org/fhir/uv/bulkdata/export/index.html#response---complete-status</span>
</span><span id="download_from_fhir_export_response-19"><a href="#download_from_fhir_export_response-19"><span class="linenos">19</span></a>
</span><span id="download_from_fhir_export_response-20"><a href="#download_from_fhir_export_response-20"><span class="linenos">20</span></a><span class="sd"> Loops through the &quot;output&quot; array and yields the resource_type (e.g., Patient)</span>
</span><span id="download_from_fhir_export_response-21"><a href="#download_from_fhir_export_response-21"><span class="linenos">21</span></a><span class="sd"> along with TextIO wrapping ndjson content.</span>
</span><span id="download_from_fhir_export_response-22"><a href="#download_from_fhir_export_response-22"><span class="linenos">22</span></a>
</span><span id="download_from_fhir_export_response-23"><a href="#download_from_fhir_export_response-23"><span class="linenos">23</span></a><span class="sd"> :param export_response: A dictionary holding the final export response.</span>
</span><span id="download_from_fhir_export_response-24"><a href="#download_from_fhir_export_response-24"><span class="linenos">24</span></a><span class="sd"> :param cred_manager: The credential manager used to authenticate to the</span>
</span><span id="download_from_fhir_export_response-25"><a href="#download_from_fhir_export_response-25"><span class="linenos">25</span></a><span class="sd"> storage account.</span>
</span><span id="download_from_fhir_export_response-26"><a href="#download_from_fhir_export_response-26"><span class="linenos">26</span></a><span class="sd"> :return: An iterator of tuples. Each tuple is comprised of:</span>
</span><span id="download_from_fhir_export_response-27"><a href="#download_from_fhir_export_response-27"><span class="linenos">27</span></a>
</span><span id="download_from_fhir_export_response-28"><a href="#download_from_fhir_export_response-28"><span class="linenos">28</span></a><span class="sd"> * FHIR resource type (str)</span>
</span><span id="download_from_fhir_export_response-29"><a href="#download_from_fhir_export_response-29"><span class="linenos">29</span></a><span class="sd"> * Export file content (io.TextIO)</span>
</span><span id="download_from_fhir_export_response-30"><a href="#download_from_fhir_export_response-30"><span class="linenos">30</span></a><span class="sd"> &quot;&quot;&quot;</span>
</span><span id="download_from_fhir_export_response-31"><a href="#download_from_fhir_export_response-31"><span class="linenos">31</span></a> <span class="c1"># TODO: Handle error array that could be contained in the response content.</span>
</span><span id="download_from_fhir_export_response-32"><a href="#download_from_fhir_export_response-32"><span class="linenos">32</span></a>
</span><span id="download_from_fhir_export_response-33"><a href="#download_from_fhir_export_response-33"><span class="linenos">33</span></a> <span class="k">for</span> <span class="n">export_entry</span> <span class="ow">in</span> <span class="n">export_response</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;output&quot;</span><span class="p">,</span> <span class="p">[]):</span>
</span><span id="download_from_fhir_export_response-34"><a href="#download_from_fhir_export_response-34"><span class="linenos">34</span></a> <span class="n">resource_type</span> <span class="o">=</span> <span class="n">export_entry</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;type&quot;</span><span class="p">)</span>
</span><span id="download_from_fhir_export_response-35"><a href="#download_from_fhir_export_response-35"><span class="linenos">35</span></a> <span class="n">blob_url</span> <span class="o">=</span> <span class="n">export_entry</span><span class="o">.</span><span class="n">get</span><span class="p">(</span><span class="s2">&quot;url&quot;</span><span class="p">)</span>
</span><span id="download_from_fhir_export_response-36"><a href="#download_from_fhir_export_response-36"><span class="linenos">36</span></a>
</span><span id="download_from_fhir_export_response-37"><a href="#download_from_fhir_export_response-37"><span class="linenos">37</span></a> <span class="k">yield</span> <span class="p">(</span>
</span><span id="download_from_fhir_export_response-38"><a href="#download_from_fhir_export_response-38"><span class="linenos">38</span></a> <span class="n">resource_type</span><span class="p">,</span>
</span><span id="download_from_fhir_export_response-39"><a href="#download_from_fhir_export_response-39"><span class="linenos">39</span></a> <span class="n">_download_export_blob</span><span class="p">(</span><span class="n">blob_url</span><span class="o">=</span><span class="n">blob_url</span><span class="p">,</span> <span class="n">cred_manager</span><span class="o">=</span><span class="n">cred_manager</span><span class="p">),</span>
</span><span id="download_from_fhir_export_response-40"><a href="#download_from_fhir_export_response-40"><span class="linenos">40</span></a> <span class="p">)</span>
</span></pre></div>


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13 changes: 7 additions & 6 deletions docs/latest/sdk/phdi/fhir/conversion.html
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Expand Up @@ -57,12 +57,13 @@ <h1 class="modulename">

<label class="view-source-button" for="mod-conversion-view-source"><span>View Source</span></label>

<div class="pdoc-code codehilite"><pre><span></span><span id="L-1"><a href="#L-1"><span class="linenos">1</span></a><span class="kn">from</span> <span class="nn">phdi.fhir.conversion.convert</span> <span class="kn">import</span> <span class="n">convert_to_fhir</span><span class="p">,</span> <span class="n">add_rr_data_to_eicr</span>
</span><span id="L-2"><a href="#L-2"><span class="linenos">2</span></a>
</span><span id="L-3"><a href="#L-3"><span class="linenos">3</span></a><span class="n">__all__</span> <span class="o">=</span> <span class="p">(</span>
</span><span id="L-4"><a href="#L-4"><span class="linenos">4</span></a> <span class="s2">&quot;add_rr_data_to_eicr&quot;</span><span class="p">,</span>
</span><span id="L-5"><a href="#L-5"><span class="linenos">5</span></a> <span class="s2">&quot;convert_to_fhir&quot;</span><span class="p">,</span>
</span><span id="L-6"><a href="#L-6"><span class="linenos">6</span></a><span class="p">)</span>
<div class="pdoc-code codehilite"><pre><span></span><span id="L-1"><a href="#L-1"><span class="linenos">1</span></a><span class="kn">from</span> <span class="nn">phdi.fhir.conversion.convert</span> <span class="kn">import</span> <span class="n">add_rr_data_to_eicr</span>
</span><span id="L-2"><a href="#L-2"><span class="linenos">2</span></a><span class="kn">from</span> <span class="nn">phdi.fhir.conversion.convert</span> <span class="kn">import</span> <span class="n">convert_to_fhir</span>
</span><span id="L-3"><a href="#L-3"><span class="linenos">3</span></a>
</span><span id="L-4"><a href="#L-4"><span class="linenos">4</span></a><span class="n">__all__</span> <span class="o">=</span> <span class="p">(</span>
</span><span id="L-5"><a href="#L-5"><span class="linenos">5</span></a> <span class="s2">&quot;add_rr_data_to_eicr&quot;</span><span class="p">,</span>
</span><span id="L-6"><a href="#L-6"><span class="linenos">6</span></a> <span class="s2">&quot;convert_to_fhir&quot;</span><span class="p">,</span>
</span><span id="L-7"><a href="#L-7"><span class="linenos">7</span></a><span class="p">)</span>
</span></pre></div>


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