Code

Write model run outputs#41

Code

Merged

zsusswein merged 26 commits intomainCDCgov/cfa-epinow2-pipeline:mainfrom zs-write-outputCDCgov/cfa-epinow2-pipeline:zs-write-outputCopy head branch name to clipboardOct 8, 2024

+1,298-3

Commits

Commits on Oct 7, 2024

• Ignore CI/CD stuff in Rbuildignore

  zsusswein

  committed
  add75ca

• Extract diagnostics from fitted model

  zsusswein

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  ace1ddd

• Basic output schema

  zsusswein

  committed
  ab5efc6

• Use .pre-commit.config.yaml from main

  Show description for 1beddcf
  zsusswein

  committed
  1beddcf

• Update output schema

  zsusswein

  committed
  737e90a

• Bump NEWS

  zsusswein

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  c0e5593

• Bump NEWS

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  0d45e73

• Expand on readme

  zsusswein

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  0247413

• Use setequal for column name checks

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  zsusswein

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  cea2741

• Apply suggestions from code review

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  zsusswein

  and

  athowes

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  2f15a27

• Update with Adam's review

  zsusswein

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  6c75733

• Update R/write_output.R

  zsusswein

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  5ea8b3b

• [pre-commit.ci] auto fixes from pre-commit.com hooks

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  pre-commit-ci[bot]

  authored and

  zsusswein

  committed
  5f9bc2c

• Update R/extract_diagnostics.R

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  zsusswein

  and

  kgostic

  committed
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• Add alert with dates for low case count diagnostic

  zsusswein

  committed
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• Apply suggestions from code review

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  zsusswein

  and

  athowes

  committed
  688a3a6

• Use new R-universe Stan repository

  zsusswein

  committed
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• Update README.md

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  zsusswein

  and

  kgostic

  committed
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• Update README.md

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  zsusswein

  and

  kgostic

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Commits on Oct 8, 2024

• Condense dir creation

  zsusswein

  committed
  c80c8cf

• Expose quantiles for summarization

  zsusswein

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  b8c352e

• Save the description of the different EpiNow2 params

  zsusswein

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  5e92d5a

• Add comment explaining why dates work

  zsusswein

  committed
  f92ccb8

• Clarify comment on EpiNow2 param outputs

  zsusswein

  committed
  1c69a0a

• Add reports to output

  zsusswein

  committed
  4287bf1

• Merge branch 'main' into zs-write-output

  zsusswein

  authored
  4b23e3c