Get more functions

R/config.R

@@ -51,6 +51,7 @@ GenerationInterval <- S7::new_class( # nolint: object_name_linter
 #'
 #' Represents the delay interval parameters.
 #' @rdname Interval
+#' @family config
 #' @export
 DelayInterval <- S7::new_class( # nolint: object_name_linter
   "DelayInterval",
@@ -61,6 +62,7 @@ DelayInterval <- S7::new_class( # nolint: object_name_linter
 #'
 #' Represents the right truncation parameters.
 #' @rdname Interval
+#' @family config
 #' @export
 RightTruncation <- S7::new_class( # nolint: object_name_linter
   "RightTruncation",

R/extract_diagnostics.R

@@ -46,6 +46,7 @@
 #'         (1) mean_accept_stat < 0.1, (2) p_divergent > 0.0075, (3)
 #'         p_max_treedepth > 0.05, and (4) p_high_rhat > 0.0075.
 #' }
+#' @family diagnostics
 #' @export
 extract_diagnostics <- function(fit,
                                 data,

_pkgdown.yml

@@ -11,10 +11,18 @@ reference:
   desc: Example data included in the package
   contents:
   - has_concept("data")
+- title: Configuration
+  desc: Manages the input of all configuration settings into the `EpiNow2` model
+  contents:
+  - has_concept("config")
 - title: Exclusions
   desc: Functions to handle exclusion of data from models
   contents:
   - has_concept("exclusions")
+- title: Diagnostics
+  desc: Functions to calculate diagnostics from fitted `EpiNow2` model
+  contents:
+  - has_concept("diagnostics")
 - title: Parameter
   desc: Functions for parameter values that are input into the `EpiNow2` model
   contents: