fix: add bioconda channel

CCBR · Dec 7, 2023 · ad8989a · ad8989a
1 parent a1c1949
commit ad8989a
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diff --git a/chipseq/ccbr_diffbind/Dockerfile b/chipseq/ccbr_diffbind/Dockerfile
@@ -84,7 +84,7 @@ ENV PATH="/opt2/conda/bin:$PATH"
 
 # install R packages from conda
 COPY environment.txt /data2/
-RUN mamba install -c conda-forge --file /data2/environment.txt
+RUN mamba install -c bioconda -c conda-forge --file /data2/environment.txt
 ENV R_LIBS_USER=/opt2/conda/lib/R/library/
 
 # Save Dockerfile in the docker

diff --git a/chipseq/ccbr_diffbind/environment.txt b/chipseq/ccbr_diffbind/environment.txt
@@ -1,4 +1,4 @@
-bioconductor-diffbind=3.10.0
+bioconductor-diffbind
 r-base=4.3.2
 r-DT
 r-knitr