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document basic pipeline usage #42

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kelly-sovacool opened this issue May 3, 2024 · 0 comments
Open

document basic pipeline usage #42

kelly-sovacool opened this issue May 3, 2024 · 0 comments
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documentation Improvements or additions to documentation

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@kelly-sovacool
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write up basic docs for cruise init, creating a samplesheet, and cruise run.

additional notes about installing CRUISE on non-biowulf platforms, or not using the CLI at all and just calling the nextflow workflow directly.

we can also add a link to the docs website from the CLI help text.
@kelly-sovacool kelly-sovacool added the documentation Improvements or additions to documentation label May 3, 2024
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