Merge pull request #22 from spirosmaggioros/test_cases

Update spare_score to work for python 3.8 up to python 3.12

.github/workflows/macos_test_cases_p3-12.yml

@@ -0,0 +1,31 @@
+name: spare_scores test cases on macos for python 3.12
+
+# workflow dispatch has been added for testing purposes
+on: [push, pull_request, workflow_dispatch]
+
+jobs:
+  build:
+    runs-on: ["macos-13"]
+
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+      - name: Set-up miniconda for macos and ubuntu
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: 3.12
+          miniconda-version: "latest"
+      - name: Create conda env
+        run: conda create -n spare python=3.12
+      - name: Install pip
+        run: conda run -n spare conda install pip
+      - name: Install spare scores
+        run: |
+          pip install setuptools twine wheel
+          python -m pip install .
+      - name: Run unit tests
+        run: |
+          cd tests/unit && python -m unittest discover -s . -p "*.py"

.github/workflows/macos_test_cases_p3-8.yml

@@ -0,0 +1,42 @@
+name: spare_scores test cases on macos for python 3.8
+
+# workflow dispatch has been added for testing purposes
+on: [push, pull_request, workflow_dispatch]
+
+jobs:
+  build:
+    runs-on: ["macos-13"]
+
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.8"
+      - name: Set-up miniconda for macos and ubuntu
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: 3.8
+          miniconda-version: "latest"
+      - name: Create conda env
+        run: conda create -n spare python=3.8
+      - name: Install pip
+        run: conda run -n spare conda install pip
+      - name: Install spare scores
+        run: |
+          pip install setuptools twine wheel
+          python setup.py bdist_wheel
+          cd dist
+          WHEEL_FILE=$(ls spare_scores*)
+          pip install "$WHEEL_FILE"
+      - name: Download dependencies
+        run: pip install setuptools && pip install .
+      - name: Generate Coverage Report
+        run: |
+          pip install pytest-cov
+          cd tests/unit && pytest --cov=../../ --cov-report=xml
+      - name: Upload Coverage to Codecov
+        uses: codecov/[email protected]
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          slug: CBICA/spare_score

.github/workflows/sphinx-docs.yml

@@ -2,18 +2,18 @@ name: Deploy static cntent to Pages
 on:
   push:
     branches: ["main"]
-  
+
 jobs:
   build-docs:
     runs-on: ubuntu-latest
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
-          python-version: '3.12'
+          python-version: "3.12"
       - name: Activate conda
         run: |
-          conda create -n spare python=3.8
+          conda create -n spare python=3.12
           conda run -n spare conda install pip
           conda run -n spare pip install spare_scores
       - name: Install dependencies
@@ -29,30 +29,29 @@ jobs:
 
       - name: Upload pages artifact
         uses: actions/upload-pages-artifact@v3
-        
+
         with:
           path: docs/_build/html
           retention-days: 90
-  
+
   deploy-docs:
     if: ${{ github.event_name == 'push' && github.ref == 'refs/heads/main' }}
     needs: build-docs
-    
+
     permissions:
       pages: write
       id-token: write
-    
+
     environment:
       name: github-pages
       url: ${{ steps.deployment.output.page_url }}
-      
-    concurrency: 
+
+    concurrency:
       group: "pages"
       cancel-in-progress: true
-    
+
     runs-on: ubuntu-latest
     steps:
-     - name: Deploy artifact to GitHub Pages
-       id: deployment
-       uses: actions/deploy-pages@v4
-
+      - name: Deploy artifact to GitHub Pages
+        id: deployment
+        uses: actions/deploy-pages@v4

.github/workflows/ubuntu_test_cases_p3-12.yml

@@ -0,0 +1,33 @@
+name: spare_scores test cases on ubuntu for python 3.12
+
+# workflow dispatch has been added for testing purposes
+on: [push, pull_request, workflow_dispatch]
+
+jobs:
+  build:
+    runs-on: ["ubuntu-latest"]
+
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+      - name: Set-up miniconda for macos and ubuntu
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: 3.12
+          miniconda-version: "latest"
+      - name: Create conda env
+        run: conda create -n spare python=3.12
+      - name: Install pip
+        run: conda run -n spare conda install pip
+      - name: Install spare scores
+        run: |
+          pip install setuptools twine wheel
+          python -m pip install .
+      - name: Download dependencies
+        run: pip install setuptools && pip install .
+      - name: Run unit tests
+        run: |
+          cd tests/unit && python -m unittest discover -s . -p "*.py"

.github/workflows/ubuntu_test_cases_p3-8.yml

@@ -0,0 +1,36 @@
+name: spare_scores test cases on ubuntu for python 3.8
+
+# workflow dispatch has been added for testing purposes
+on: [push, pull_request, workflow_dispatch]
+
+jobs:
+  build:
+    runs-on: ["ubuntu-latest"]
+
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.8"
+      - name: Set-up miniconda for macos and ubuntu
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: 3.8
+          miniconda-version: "latest"
+      - name: Create conda env
+        run: conda create -n spare python=3.8
+      - name: Install pip
+        run: conda run -n spare conda install pip
+      - name: Install spare scores
+        run: |
+          pip install setuptools twine wheel
+          python setup.py bdist_wheel
+          cd dist
+          WHEEL_FILE=$(ls spare_scores*)
+          pip install "$WHEEL_FILE"
+      - name: Download dependencies
+        run: pip install setuptools && pip install .
+      - name: Run unit tests
+        run: |
+          cd tests/unit && python -m unittest discover -s . -p "*.py"