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Manually added more workflows for the other versions
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spirosmaggioros committed Sep 2, 2024
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42 changes: 42 additions & 0 deletions .github/workflows/macos-tests-3.10.yml
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name: macos python=3.10

# workflow dispatch has been added for testing purposes
on: [push, pull_request, workflow_dispatch]

jobs:
build:
runs-on: ["macos-13"]

steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.10"
- name: Set-up miniconda for macos and ubuntu
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
python-version: 3.10
miniconda-version: "latest"
- name: Create conda env
run: conda create -n spare python=3.10
- name: Install pip
run: conda run -n spare conda install pip
- name: Install spare scores
run: |
pip install setuptools twine wheel
python setup.py bdist_wheel
cd dist
WHEEL_FILE=$(ls spare_scores*)
pip install "$WHEEL_FILE"
- name: Download dependencies
run: pip install setuptools && pip install .
- name: Generate Coverage Report
run: |
pip install pytest-cov
cd tests/unit && pytest --cov=../../ --cov-report=xml
- name: Upload Coverage to Codecov
uses: codecov/[email protected]
with:
token: ${{ secrets.CODECOV_TOKEN }}
slug: CBICA/spare_score
42 changes: 42 additions & 0 deletions .github/workflows/macos-tests-3.11.yml
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name: macos python=3.11

# workflow dispatch has been added for testing purposes
on: [push, pull_request, workflow_dispatch]

jobs:
build:
runs-on: ["macos-13"]

steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.11"
- name: Set-up miniconda for macos and ubuntu
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
python-version: 3.11
miniconda-version: "latest"
- name: Create conda env
run: conda create -n spare python=3.11
- name: Install pip
run: conda run -n spare conda install pip
- name: Install spare scores
run: |
pip install setuptools twine wheel
python setup.py bdist_wheel
cd dist
WHEEL_FILE=$(ls spare_scores*)
pip install "$WHEEL_FILE"
- name: Download dependencies
run: pip install setuptools && pip install .
- name: Generate Coverage Report
run: |
pip install pytest-cov
cd tests/unit && pytest --cov=../../ --cov-report=xml
- name: Upload Coverage to Codecov
uses: codecov/[email protected]
with:
token: ${{ secrets.CODECOV_TOKEN }}
slug: CBICA/spare_score
2 changes: 1 addition & 1 deletion .github/workflows/macos-tests-3.8.yml
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@@ -1,4 +1,4 @@
name: MacOS python=3.8
name: macos python=3.8

# workflow dispatch has been added for testing purposes
on: [push, pull_request, workflow_dispatch]
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42 changes: 42 additions & 0 deletions .github/workflows/macos-tests-3.9.yml
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name: macos python=3.9

# workflow dispatch has been added for testing purposes
on: [push, pull_request, workflow_dispatch]

jobs:
build:
runs-on: ["macos-13"]

steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.9"
- name: Set-up miniconda for macos and ubuntu
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
python-version: 3.9
miniconda-version: "latest"
- name: Create conda env
run: conda create -n spare python=3.9
- name: Install pip
run: conda run -n spare conda install pip
- name: Install spare scores
run: |
pip install setuptools twine wheel
python setup.py bdist_wheel
cd dist
WHEEL_FILE=$(ls spare_scores*)
pip install "$WHEEL_FILE"
- name: Download dependencies
run: pip install setuptools && pip install .
- name: Generate Coverage Report
run: |
pip install pytest-cov
cd tests/unit && pytest --cov=../../ --cov-report=xml
- name: Upload Coverage to Codecov
uses: codecov/[email protected]
with:
token: ${{ secrets.CODECOV_TOKEN }}
slug: CBICA/spare_score
36 changes: 36 additions & 0 deletions .github/workflows/ubuntu-tests-3.10.yml
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name: ubuntu python=3.10

# workflow dispatch has been added for testing purposes
on: [push, pull_request, workflow_dispatch]

jobs:
build:
runs-on: ["ubuntu-latest"]

steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.10"
- name: Set-up miniconda for macos and ubuntu
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
python-version: 3.10
miniconda-version: "latest"
- name: Create conda env
run: conda create -n spare python=3.10
- name: Install pip
run: conda run -n spare conda install pip
- name: Install spare scores
run: |
pip install setuptools twine wheel
python setup.py bdist_wheel
cd dist
WHEEL_FILE=$(ls spare_scores*)
pip install "$WHEEL_FILE"
- name: Download dependencies
run: pip install setuptools && pip install .
- name: Run unit tests
run: |
cd tests/unit && python -m unittest discover -s . -p "*.py"
36 changes: 36 additions & 0 deletions .github/workflows/ubuntu-tests-3.11.yml
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@@ -0,0 +1,36 @@
name: ubuntu python=3.11

# workflow dispatch has been added for testing purposes
on: [push, pull_request, workflow_dispatch]

jobs:
build:
runs-on: ["ubuntu-latest"]

steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.11"
- name: Set-up miniconda for macos and ubuntu
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
python-version: 3.11
miniconda-version: "latest"
- name: Create conda env
run: conda create -n spare python=3.11
- name: Install pip
run: conda run -n spare conda install pip
- name: Install spare scores
run: |
pip install setuptools twine wheel
python setup.py bdist_wheel
cd dist
WHEEL_FILE=$(ls spare_scores*)
pip install "$WHEEL_FILE"
- name: Download dependencies
run: pip install setuptools && pip install .
- name: Run unit tests
run: |
cd tests/unit && python -m unittest discover -s . -p "*.py"
2 changes: 1 addition & 1 deletion .github/workflows/ubuntu-tests-3.12.yml
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@@ -1,4 +1,4 @@
name: Ubuntu python=3.12
name: ubuntu python=3.12

# workflow dispatch has been added for testing purposes
on: [push, pull_request, workflow_dispatch]
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Original file line number Diff line number Diff line change
@@ -1,4 +1,4 @@
name: Ubuntu python=3.8
name: ubuntu python=3.8

# workflow dispatch has been added for testing purposes
on: [push, pull_request, workflow_dispatch]
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36 changes: 36 additions & 0 deletions .github/workflows/ubuntu-tests-3.9.yml
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@@ -0,0 +1,36 @@
name: ubuntu python=3.9

# workflow dispatch has been added for testing purposes
on: [push, pull_request, workflow_dispatch]

jobs:
build:
runs-on: ["ubuntu-latest"]

steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.9"
- name: Set-up miniconda for macos and ubuntu
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
python-version: 3.9
miniconda-version: "latest"
- name: Create conda env
run: conda create -n spare python=3.9
- name: Install pip
run: conda run -n spare conda install pip
- name: Install spare scores
run: |
pip install setuptools twine wheel
python setup.py bdist_wheel
cd dist
WHEEL_FILE=$(ls spare_scores*)
pip install "$WHEEL_FILE"
- name: Download dependencies
run: pip install setuptools && pip install .
- name: Run unit tests
run: |
cd tests/unit && python -m unittest discover -s . -p "*.py"
14 changes: 10 additions & 4 deletions README.md
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@@ -1,8 +1,14 @@
[![codecov](https://codecov.io/gh/CBICA/spare_score/graph/badge.svg?token=7yk7pkydHE)](https://codecov.io/gh/CBICA/spare_score)
![macos python=3.12 build](https://github.com/CBICA/spare_score/actions/workflows/macos_test_cases_p3-12.yml/badge.svg)
![macos python=3.8 build](https://github.com/CBICA/spare_score/actions/workflows/macos_test_cases_p3-12.yml/badge.svg)
![ubuntu python=3.12 build](https://github.com/CBICA/spare_score/actions/workflows/ubuntu_test_cases_p3-12.yml/badge.svg)
![ubuntu python=3.8 build](https://github.com/CBICA/spare_score/actions/workflows/ubuntu_test_cases_p3-8.yml/badge.svg)
![macos python=3.12](https://github.com/CBICA/spare_score/actions/workflows/macos-tests-3.12.yml/badge.svg)
![macos python=3.11](https://github.com/CBICA/spare_score/actions/workflows/macos-tests-3.11.yml/badge.svg)
![macos python=3.10](https://github.com/CBICA/spare_score/actions/workflows/macos-tests-3.10.yml/badge.svg)
![macos python=3.9](https://github.com/CBICA/spare_score/actions/workflows/macos-tests-3.9.yml/badge.svg)
![macos python=3.8](https://github.com/CBICA/spare_score/actions/workflows/macos-tests-3.8.yml/badge.svg)
![ubuntu python=3.12](https://github.com/CBICA/spare_score/actions/workflows/ubuntu-tests-3.12.yml/badge.svg)
![ubuntu python=3.11](https://github.com/CBICA/spare_score/actions/workflows/ubuntu-tests-3.11.yml/badge.svg)
![ubuntu python=3.10](https://github.com/CBICA/spare_score/actions/workflows/ubuntu-tests-3.10.yml/badge.svg)
![ubuntu python=3.9](https://github.com/CBICA/spare_score/actions/workflows/ubuntu-tests-3.9.yml/badge.svg)
![ubuntu python=3.8](https://github.com/CBICA/spare_score/actions/workflows/ubuntu-tests-3.8.yml/badge.svg)

# Compute SPARE Scores for Your Case

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1 change: 1 addition & 0 deletions dev-dependencies.txt
Original file line number Diff line number Diff line change
Expand Up @@ -26,6 +26,7 @@ pluggy==1.5.0
pyparsing==3.1.0
pyrsistent==0.19.3
pytest==8.2.2
pytest-cov==5.0.0
python-dateutil==2.8.2
pytz==2023.3
PyYAML==6.0.2
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