Revert "better workflows to run with all the python versions"

This reverts commit 6460a12.

.github/workflows/codecov.yml

@@ -1,42 +1,14 @@
-name: codecov report
-
-# workflow dispatch has been added for testing purposes
-on: [push, pull_request, workflow_dispatch]
+name: Test Coverage and Report to Codecov
+on: 
+  pull_request:
+    branches: ["main"]
 
+
 jobs:
-  build:
-    runs-on: ["macos-13"]
-
+  codecov:
+    runs-on: ubuntu-latest
     steps:
-      - uses: actions/checkout@v4
-      - uses: actions/setup-python@v5
-        with:
-          python-version: "3.8"
-      - name: Set-up miniconda for macos and ubuntu
-        uses: conda-incubator/setup-miniconda@v2
-        with:
-          auto-update-conda: true
-          python-version: 3.8
-          miniconda-version: "latest"
-      - name: Create conda env
-        run: conda create -n spare python=3.8
-      - name: Install pip
-        run: conda run -n spare conda install pip
-      - name: Install spare scores
-        run: |
-          pip install setuptools twine wheel
-          python setup.py bdist_wheel
-          cd dist
-          WHEEL_FILE=$(ls spare_scores*)
-          pip install "$WHEEL_FILE"
-      - name: Download dependencies
-        run: pip install setuptools && pip install .
-      - name: Generate Coverage Report
-        run: |
-          pip install pytest-cov
-          cd tests/unit && pytest --cov=../../ --cov-report=xml
-      - name: Upload Coverage to Codecov
-        uses: codecov/[email protected]
+      - name: Upload coverage reports
+        uses: codecov/[email protected]
         with:
           token: ${{ secrets.CODECOV_TOKEN }}
-          slug: CBICA/spare_score

.github/workflows/macos-tests.yml → .github/workflows/macos_test_cases_p3-12.yml

@@ -1,20 +1,17 @@
-name: macos tests
+name: MacOS python=3.12
 
 # workflow dispatch has been added for testing purposes
 on: [push, pull_request, workflow_dispatch]
 
 jobs:
   build:
     runs-on: ["macos-13"]
-    strategy:
-      matrix:
-        python-version: ["3.8", "3.9", "3.10", "3.11", "3.12"]
-    name: Python ${{ matrix.python-version }} sample
+
     steps:
       - uses: actions/checkout@v4
       - uses: actions/setup-python@v5
         with:
-          python-version: ${{ matrix.python-version }}
+          python-version: "3.12.4"
       - name: Install spare scores
         run: |
           pip install -r dev-dependencies.txt

.github/workflows/macos_test_cases_p3-8.yml

@@ -0,0 +1,42 @@
+name: MacOS python=3.8
+
+# workflow dispatch has been added for testing purposes
+on: [push, pull_request, workflow_dispatch]
+
+jobs:
+  build:
+    runs-on: ["macos-13"]
+
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.8"
+      - name: Set-up miniconda for macos and ubuntu
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: 3.8
+          miniconda-version: "latest"
+      - name: Create conda env
+        run: conda create -n spare python=3.8
+      - name: Install pip
+        run: conda run -n spare conda install pip
+      - name: Install spare scores
+        run: |
+          pip install setuptools twine wheel
+          python setup.py bdist_wheel
+          cd dist
+          WHEEL_FILE=$(ls spare_scores*)
+          pip install "$WHEEL_FILE"
+      - name: Download dependencies
+        run: pip install setuptools && pip install .
+      - name: Generate Coverage Report
+        run: |
+          pip install pytest-cov
+          cd tests/unit && pytest --cov=../../ --cov-report=xml
+      - name: Upload Coverage to Codecov
+        uses: codecov/[email protected]
+        with:
+          token: ${{ secrets.CODECOV_TOKEN }}
+          slug: CBICA/spare_score

.github/workflows/ubuntu_test_cases_p3-12.yml

@@ -0,0 +1,33 @@
+name: Ubuntu python=3.12
+
+# workflow dispatch has been added for testing purposes
+on: [push, pull_request, workflow_dispatch]
+
+jobs:
+  build:
+    runs-on: ["ubuntu-latest"]
+
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.12"
+      - name: Set-up miniconda for macos and ubuntu
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: 3.12
+          miniconda-version: "latest"
+      - name: Create conda env
+        run: conda create -n spare python=3.12
+      - name: Install pip
+        run: conda run -n spare conda install pip
+      - name: Install spare scores
+        run: |
+          pip install setuptools twine wheel
+          python -m pip install .
+      - name: Download dependencies
+        run: pip install setuptools && pip install .
+      - name: Run unit tests
+        run: |
+          cd tests/unit && python -m unittest discover -s . -p "*.py"

.github/workflows/ubuntu_test_cases_p3-8.yml

@@ -0,0 +1,36 @@
+name: Ubuntu python=3.8
+
+# workflow dispatch has been added for testing purposes
+on: [push, pull_request, workflow_dispatch]
+
+jobs:
+  build:
+    runs-on: ["ubuntu-latest"]
+
+    steps:
+      - uses: actions/checkout@v4
+      - uses: actions/setup-python@v5
+        with:
+          python-version: "3.8"
+      - name: Set-up miniconda for macos and ubuntu
+        uses: conda-incubator/setup-miniconda@v2
+        with:
+          auto-update-conda: true
+          python-version: 3.8
+          miniconda-version: "latest"
+      - name: Create conda env
+        run: conda create -n spare python=3.8
+      - name: Install pip
+        run: conda run -n spare conda install pip
+      - name: Install spare scores
+        run: |
+          pip install setuptools twine wheel
+          python setup.py bdist_wheel
+          cd dist
+          WHEEL_FILE=$(ls spare_scores*)
+          pip install "$WHEEL_FILE"
+      - name: Download dependencies
+        run: pip install setuptools && pip install .
+      - name: Run unit tests
+        run: |
+          cd tests/unit && python -m unittest discover -s . -p "*.py"

README.md

@@ -1,6 +1,9 @@
 [![codecov](https://codecov.io/gh/CBICA/spare_score/graph/badge.svg?token=7yk7pkydHE)](https://codecov.io/gh/CBICA/spare_score)
-![macos build](https://github.com/CBICA/spare_score/actions/workflows/macos-tests.yml/badge.svg)
-![ubuntu build](https://github.com/CBICA/spare_score/actions/workflows/ubuntu-tests.yml/badge.svg)
+![macos python=3.12 build](https://github.com/CBICA/spare_score/actions/workflows/macos_test_cases_p3-12.yml/badge.svg)
+![macos python=3.8 build](https://github.com/CBICA/spare_score/actions/workflows/macos_test_cases_p3-12.yml/badge.svg)
+![ubuntu python=3.12 build](https://github.com/CBICA/spare_score/actions/workflows/ubuntu_test_cases_p3-12.yml/badge.svg)
+![ubuntu python=3.8 build](https://github.com/CBICA/spare_score/actions/workflows/ubuntu_test_cases_p3-8.yml/badge.svg)
+
 # Compute SPARE Scores for Your Case
 
 "SPARE" is short for "Spatial Pattern of Abnormalities for Recognition of ..." If you have brain images of a case population, such as the Alzheimer's disease (AD), the SPARE model will try to find characteristic brain patterns of AD with respect to a control population, such as cognitively normal. This would be an example of a classification-based SPARE model (currently powered by support vector machine or SVM). This model (that we named SPARE-AD) then computes SPARE-AD scores on an individual-basis that indicates how much the individual carries the learned brain patterns of AD.