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Test cases fixes and pre-commit update #53

Test cases fixes and pre-commit update

Test cases fixes and pre-commit update #53

name: macos tests python=3.8
# workflow dispatch has been added for testing purposes
on: [push, pull_request, workflow_dispatch]
jobs:
build:
runs-on: ["macos-13"]
steps:
- uses: actions/checkout@v4
- uses: actions/setup-python@v5
with:
python-version: "3.8"
- name: Set-up miniconda for macos and ubuntu
uses: conda-incubator/setup-miniconda@v2
with:
auto-update-conda: true
python-version: 3.8
miniconda-version: "latest"
- name: Create conda env
run: conda create -n spare python=3.8
- name: Install pip
run: conda run -n spare conda install pip
- name: Install spare scores
run: |
pip install setuptools twine wheel
python setup.py bdist_wheel
cd dist
WHEEL_FILE=$(ls spare_scores*)
pip install "$WHEEL_FILE"
- name: Download dependencies
run: pip install setuptools && pip install .
- name: Generate Coverage Report
run: |
pip install pytest-cov
cd tests/unit && pytest --cov=../../ --cov-report=xml
- name: Upload Coverage to Codecov
uses: codecov/[email protected]
with:
token: ${{ secrets.CODECOV_TOKEN }}
slug: CBICA/spare_score