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Update README.md
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AlexanderGetka-cbica authored Dec 10, 2024
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## Installation Instructions

1. Mamba installation
1. (Optional but recommended for environment management) Mamba installation
[Mamba Installation Guide (Official)](https://mamba.readthedocs.io/en/latest/installation/mamba-installation.html)

Example (Linux x86):
```bash
wget https://github.com/conda-forge/miniforge/releases/latest/download/Mambaforge-Linux-x86_64.sh

bash Mambaforge-Linux-x86_64.sh
mamba create -c conda-forge -c bioconda -n NCP_env python=3.12 snakemake
mamba create -c conda-forge -c bioconda -n NCP_env python=3.12
mamba activate NCP_env
```
2. Manual installation
2. Install NiChart_Project into the environment
```bash
git clone https://github.com/CBICA/NiChart_Project.git
pip install -r requirements.txt
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```
Then install PyTorch using the following command. Make sure to use the correct index url for your CUDA version as specified on the [PyTorch getting started page](https://pytorch.org/get-started/locally/).
On Linux, version 2.3.1 is sufficient. On Windows, 2.5.1 is known to work.
On Linux, use version 2.3.1. On Windows, 2.5.1 is known to work.
```
pip install torch==2.3.1 --index-url https://download.pytorch.org/whl/cu121
```
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