Update readme with bash command #36
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| name: Pipeline test cases for ubuntu | |
| # workflow dispatch has been added for testing purposes | |
| on: [push, pull_request, workflow_dispatch] | |
| jobs: | |
| build: | |
| runs-on: ["ubuntu-latest"] | |
| steps: | |
| - uses: actions/checkout@v4 | |
| - uses: actions/setup-python@v5 | |
| with: | |
| python-version: "3.8" | |
| - name: Set-up miniconda for macos and ubuntu | |
| uses: conda-incubator/setup-miniconda@v2 | |
| with: | |
| auto-update-conda: true | |
| python-version: 3.8 | |
| miniconda-version: "latest" | |
| - name: Install dependencies | |
| run: | | |
| python -m pip cache purge | |
| pip install -r requirements.txt | |
| - name: pipeline test for vTest1 using spare | |
| run: | | |
| python3 run.py --dir_input src/workflow/test_input/vTest1 --dir_output src/workflow/test_output/vTest1 --studies 1 --version vTest --cores 4 --conda 1 --dry_run 1 |