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toppred :: Transmembrane topology prediction based on von Heijne, G. (1992) Membrane Protein Structure Prediction: Hydrophobicity Analysis and the 'Positive Inside' (PMID: 1593632)
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TOPPRED - Transmembrane topology prediction.
This program is a new implementation of the original toppred program,
based on G. von Heijne algorithm :
"Membrane protein structure prediction. Hydrophobicity analysis and
the positive-inside rule." J Mol Biol 1992 May 20;225(2):487-94.
"TopPred II: an improved software for membrane protein structure
predictions." CABIOS 10(6):685-6, 1994 Dec.
This implementation can use 2 optionals programs in order to
display graphical results:
- gnuplot version 3.7 patchlevel 1 or more
`gnuplot' can be used in order to display the
hydrophobicity profile of a given sequence.
see <http://www.gnuplot.info/>
- libgd with png support
`gd' library can be used in order to produce a
graphical representation of the calculated topologies.
see <http://www.boutell.com/gd>
For installation, please see INSTALL note.
Please report bugs, comments or suggestions to:
Eric Deveaud: [email protected]
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toppred :: Transmembrane topology prediction based on von Heijne, G. (1992) Membrane Protein Structure Prediction: Hydrophobicity Analysis and the 'Positive Inside' (PMID: 1593632)
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