Acctually add fixed example_config.yaml

examples/files/configs/example_config.yaml

@@ -1,181 +1,182 @@
-start_date: '2026-01-01T00:00'
-end_date: '2027-01-01T00:00'
+---
+start_date: "2026-01-01T00:00"
+end_date: "2027-01-01T00:00"
 cycles:
-  init:
-    tasks:
-      extpar:
-        inputs:
-          - obs_data:
-              arg_option: "--input"
-        outputs:
-          - extpar_file
-  icon_bimonthly:
-    period: 'P2M'
-    tasks:
-      preproc:
-        inputs:
-          - grid_file:
-              arg_option: "-g"
-          - extpar_file:
-              date: '2026-01-01T00:00'
-              arg_option: "-p"
-          - ERA5:
-              arg_option: "-e"
-        outputs:
-          - icon_input
-        depends:
-          - icon:
-              lag: '-P4M'
-      icon:
-        inputs:
-          - grid_file:
-              arg_option: "-g"
-          - icon_input:
-              arg_option: "--input"
-          #- icon_restart:
-          #    lag: '-P2M'
-        outputs:
-          - stream_1
-          - stream_2
-          #- icon_restart
-      postproc_1:
-        inputs:
-          - stream_1:
-              arg_option: "--input"
-        outputs:
-          - postout_1
-      store_and_clean_1:
-        inputs:
-          - postout_1:
-              arg_option: "--input"
-          - stream_1:
-              arg_option: "--stream"
-          - icon_input:
-              arg_option: "--icon_input"
-        outputs:
-          - stored_data_1
-  yearly:
-    period: 'P1Y'
-    tasks:
-      postproc_2:
-        inputs:
-          - stream_2:
-             lag: 
-               - 'P0M'
-             arg_option: "--input"
-        outputs:
-          - postout_2
-      store_and_clean_2:
-        inputs:
-          - postout_2:
-             arg_option: "--input"
-          - stream_2:
-             lag: 
-               - 'P0M'
-        outputs:
-          - stored_data_2
+  - init:
+      tasks:
+        - extpar:
+            inputs:
+              - obs_data:
+                  arg_option: "--input"
+            outputs:
+              - extpar_file
+  - icon_bimonthly:
+      period: "P2M"
+      tasks:
+        - preproc:
+            inputs:
+              - grid_file:
+                  arg_option: "-g"
+              - extpar_file:
+                  date: "2026-01-01T00:00"
+                  arg_option: "-p"
+              - ERA5:
+                  arg_option: "-e"
+            outputs:
+              - icon_input
+            depends:
+              - icon:
+                  lag: "-P4M"
+        - icon:
+            inputs:
+              - grid_file:
+                  arg_option: "-g"
+              - icon_input:
+                  arg_option: "--input"
+              #- icon_restart:
+              #    lag: '-P2M'
+            outputs:
+              - stream_1
+              - stream_2
+              #- icon_restart
+        - postproc_1:
+            inputs:
+              - stream_1:
+                  arg_option: "--input"
+            outputs:
+              - postout_1
+        - store_and_clean_1:
+            inputs:
+              - postout_1:
+                  arg_option: "--input"
+              - stream_1:
+                  arg_option: "--stream"
+              - icon_input:
+                  arg_option: "--icon_input"
+            outputs:
+              - stored_data_1
+  - yearly:
+      period: "P1Y"
+      tasks:
+        - postproc_2:
+            inputs:
+              - stream_2:
+                  lag:
+                    - "P0M"
+                  arg_option: "--input"
+            outputs:
+              - postout_2
+        - store_and_clean_2:
+            inputs:
+              - postout_2:
+                  arg_option: "--input"
+              - stream_2:
+                  lag:
+                    - "P0M"
+            outputs:
+              - stored_data_2
 # Each task and piece of data (input and output of tasks) used to
 # define the graph is described in that section
 tasks:
-  root:
-    # All tasks inherit the root task properties
-    host: santis
-    account: g110
-  extpar:
-    plugin: extpar
-    command: $PWD/files/scripts/extpar
-    command_option: "--verbose" # todo implement support
-    config: path/to/namelists/dir
-    uenv:
-      squashfs: path/to/squashfs
-      mount_point: runtime/mount/point
-    nodes: 1
-    walltime: '00:02:00'
-  preproc:
-    plugin: AiiDA Shell
-    command: $PWD/files/scripts/cleanup.sh
-    nodes: 4
-    walltime: '00:02:00'
-    config: path/to/config/dir
-    uenv:
-      squashfs: path/to/squashfs
-      mount_point: runtime/mount/point
-  icon:
-    plugin: icon
-    command: $PWD/files/scripts/icon
-    nodes: 40
-    walltime: '23:59:59'
-    config: path/to/namelists/dir
-    uenv:
-      squashfs: path/to/squashfs
-      mount_point: runtime/mount/point
-  postproc_1:
-    plugin: AiiDA Shell
-    command: $PWD/files/scripts/main_script_ocn.sh
-    nodes: 2
-    walltime: '00:05:00'
-    conda_env: path/to/yaml/env/file
-    uenv:
-      squashfs: path/to/squashfs
-      mount_point: runtime/mount/point
-  postproc_2:
-    plugin: AiiDA Shell
-    command: $PWD/files/scripts/main_script_atm.sh
-    nodes: 2
-    walltime: '00:05:00'
-    src: path/to/src/dir
-    conda_env: path/to/yaml/env/file
-    uenv:
-      squashfs: path/to/squashfs
-      mount_point: runtime/mount/point
-  store_and_clean_1:
-    plugin: AiiDA Shell
-    command: $PWD/files/scripts/post_clean.sh
-    nodes: 1
-    walltime: '00:01:00'
-  store_and_clean_2:
-    plugin: AiiDA Shell
-    command: $PWD/files/scripts/post_clean.sh
-    nodes: 1
-    walltime: '00:01:00'
+  - ROOT:
+      # All tasks inherit the root task properties
+      host: santis
+      account: g110
+  - extpar:
+      plugin: extpar
+      command: $PWD/files/scripts/extpar
+      command_option: "--verbose" # todo implement support
+      config: path/to/namelists/dir
+      uenv:
+        squashfs: path/to/squashfs
+        mount_point: runtime/mount/point
+      nodes: 1
+      walltime: "00:02:00"
+  - preproc:
+      plugin: AiiDA Shell
+      command: $PWD/files/scripts/cleanup.sh
+      nodes: 4
+      walltime: "00:02:00"
+      config: path/to/config/dir
+      uenv:
+        squashfs: path/to/squashfs
+        mount_point: runtime/mount/point
+  - icon:
+      plugin: icon
+      command: $PWD/files/scripts/icon
+      nodes: 40
+      walltime: "23:59:59"
+      config: path/to/namelists/dir
+      uenv:
+        squashfs: path/to/squashfs
+        mount_point: runtime/mount/point
+  - postproc_1:
+      plugin: AiiDA Shell
+      command: $PWD/files/scripts/main_script_ocn.sh
+      nodes: 2
+      walltime: "00:05:00"
+      conda_env: path/to/yaml/env/file
+      uenv:
+        squashfs: path/to/squashfs
+        mount_point: runtime/mount/point
+  - postproc_2:
+      plugin: AiiDA Shell
+      command: $PWD/files/scripts/main_script_atm.sh
+      nodes: 2
+      walltime: "00:05:00"
+      src: path/to/src/dir
+      conda_env: path/to/yaml/env/file
+      uenv:
+        squashfs: path/to/squashfs
+        mount_point: runtime/mount/point
+  - store_and_clean_1:
+      plugin: AiiDA Shell
+      command: $PWD/files/scripts/post_clean.sh
+      nodes: 1
+      walltime: "00:01:00"
+  - store_and_clean_2:
+      plugin: AiiDA Shell
+      command: $PWD/files/scripts/post_clean.sh
+      nodes: 1
+      walltime: "00:01:00"
 data:
-  preproc_output:
-    type: file
-    src: $PWD/files/data/file.ncdf
-  grid_file:
-    type: file
-    src: $PWD/files/data/grid
-  obs_data:
-    type: file
-    src: $PWD/files/data/obs_data
-  ERA5:
-    type: file
-    src: $PWD/files/data/era5
-  extpar_file:
-    type: file
-    src: output
-  icon_input:
-    type: file
-    src: output
-  icon_restart:
-    type: file
-    format: ncdf
-    src: restart
-  stream_1:
-    type: file
-    src: output_1
-  stream_2:
-    type: file
-    src: output_2
-  postout_1:
-    type: file
-    src: postout
-  postout_2:
-    type: file
-    src: postout
-  stored_data_1:
-    type: file
-    src: stored_data
-  stored_data_2:
-    type: file
-    src: stored_data
+  - preproc_output:
+      type: file
+      src: $PWD/files/data/file.ncdf
+  - grid_file:
+      type: file
+      src: $PWD/files/data/grid
+  - obs_data:
+      type: file
+      src: $PWD/files/data/obs_data
+  - ERA5:
+      type: file
+      src: $PWD/files/data/era5
+  - extpar_file:
+      type: file
+      src: output
+  - icon_input:
+      type: file
+      src: output
+  - icon_restart:
+      type: file
+      format: ncdf
+      src: restart
+  - stream_1:
+      type: file
+      src: output_1
+  - stream_2:
+      type: file
+      src: output_2
+  - postout_1:
+      type: file
+      src: postout
+  - postout_2:
+      type: file
+      src: postout
+  - stored_data_1:
+      type: file
+      src: stored_data
+  - stored_data_2:
+      type: file
+      src: stored_data