Merge branch 'main' into 215-helix-probrlems

.github/workflows/docs.yml

@@ -0,0 +1,84 @@
+name: docs-build-deploy
+
+on:
+  workflow_dispatch:
+  push:
+    branches: ["main", "docs-*"]
+  pull_request:
+  release:
+    types: [published]
+
+jobs:
+  build-docs:
+    runs-on: ubuntu-latest
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: "3.10"
+      - name: Install dependencies
+        run: |
+          python -m pip install quartodoc
+      - uses: quarto-dev/quarto-actions/setup@v2
+        with:
+          version: "1.2.475"
+      - name: Build docs
+        run: |
+          make docs-build
+      # push to netlify -------------------------------------------------------
+
+      # set release name ----
+
+      - name: Configure pull release name
+        if: ${{github.event_name == 'pull_request'}}
+        run: |
+          echo "RELEASE_NAME=pr-${PR_NUMBER}" >> $GITHUB_ENV
+        env:
+          PR_NUMBER: ${{ github.event.number }}
+      - name: Configure branch release name
+        if: ${{github.event_name != 'pull_request'}}
+        run: |
+          # use branch name, but replace slashes. E.g. feat/a -> feat-a
+          echo "RELEASE_NAME=${GITHUB_REF_NAME/\//-}" >> $GITHUB_ENV
+      # deploy ----
+
+      - name: Create Github Deployment
+        uses: bobheadxi/[email protected]
+        id: deployment
+        with:
+          step: start
+          token: ${{ secrets.GITHUB_TOKEN }}
+          env: ${{ env.RELEASE_NAME }}
+          ref: ${{ github.head_ref }}
+          transient: true
+          logs: 'https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}'
+
+      - name: Netlify docs preview
+        run: |
+          npm install -g netlify-cli
+          # push main branch to production, others to preview --
+          if [ "${ALIAS}" == "main" ]; then
+            netlify deploy --dir=docs/_build --alias="main"
+          else
+            netlify deploy --dir=docs/_build --alias="${ALIAS}"
+          fi
+        env:
+          NETLIFY_SITE_ID: ${{ secrets.NETLIFY_SITE_ID }}
+          NETLIFY_AUTH_TOKEN: ${{ secrets.NETLIFY_AUTH_TOKEN }}
+          ALIAS: ${{ steps.deployment.outputs.env }}
+
+      - name: Update Github Deployment
+        uses: bobheadxi/[email protected]
+        if: ${{ always() }}
+        with:
+          step: finish
+          token: ${{ secrets.GITHUB_TOKEN }}
+          status: ${{ job.status }}
+          deployment_id: ${{ steps.deployment.outputs.deployment_id }}
+          env_url: 'https://${{ steps.deployment.outputs.env }}--molecularnodes.netlify.app'
+          logs: 'https://github.com/${{ github.repository }}/actions/runs/${{ github.run_id }}'
+      - uses: peaceiris/actions-gh-pages@v3
+        if: github.event_name == 'release'
+        with:
+          github_token: ${{ secrets.GITHUB_TOKEN }}
+          publish_dir: docs/_build

.github/workflows/tests.yml

@@ -0,0 +1,43 @@
+name: test-addon
+
+on: 
+  push:
+    branches: 
+      - main
+  pull_request:
+    branches:
+      - main
+
+jobs:
+  build:
+    runs-on: ${{ matrix.os }}
+    strategy:
+      max-parallel: 4
+      fail-fast: false
+      matrix:
+        blender-version: ["3.5.0"]
+        os: [ubuntu-latest, windows-latest]
+        # os: [ubuntu-latest]
+    steps:
+      - uses: actions/checkout@v2
+      - uses: actions/setup-python@v2
+        with:
+          python-version: '3.10'
+          cache: 'pip'
+      - run: pip install bpy==${{ matrix.blender-version }}
+      - run: pip install -r requirements.txt
+
+      - name: Install MolecularNodes
+        run: pip install .
+
+      - name: Run Tests
+        run: pytest --verbose --cov=MolecularNodes --cov-report=xml:coverage.xml
+
+      - name: Expose coverage as a CI download # Related to test_addon_blender_advanced.py
+        uses: actions/upload-artifact@v1
+        with:
+          name: coverage.xml
+          path: coverage.xml
+      # setup ssh to check on file system state
+      - name: Upload coverage reports to Codecov
+        uses: codecov/codecov-action@v3

.gitignore

@@ -6,7 +6,9 @@ logs/side-packages-install.log
 *.log
 *.pyc
 .Rproj.user
-docs
-.quarto
-.DS_Store
-MolecularNodes/dev.py
+/.quarto/
+*egg*/*
+build/*
+.hypothesis/unicode_data/13.0.0/charmap.json.gz
+coverage.xml
+.coverage

MANIFEST.in

@@ -0,0 +1 @@
+include MolecularNodes/assets/*

Makefile

@@ -0,0 +1,7 @@
+docs-build:
+	cd docs && quartodoc build
+	quarto render docs
+
+test:
+	pip3 install .
+	pytest -vv