build(deps): bump extern/fabm from 280b2dd to 5b3574b
#72
Workflow file for this run
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| name: Build and test | |
| on: | |
| push: | |
| branches: | |
| - "**" | |
| pull_request: | |
| jobs: | |
| gfortran: | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| RDMAV_FORK_SAFE: 1 | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest"] #, "macos-latest", "windows-latest"] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - name: Install dependencies | |
| run: sudo apt-get install mpich | |
| - name: Clone pygetm | |
| uses: actions/checkout@v4 | |
| with: | |
| repository: BoldingBruggeman/getm-rewrite | |
| submodules: recursive | |
| path: getm-rewrite | |
| - name: Clone fabmos | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| path: fabmos | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: getm-rewrite/environment-min.yml | |
| activate-environment: pygetm | |
| - name: Compile and install pygetm | |
| run: | | |
| cd getm-rewrite | |
| source ./install | |
| - name: Compile and install pyfabm | |
| run: | | |
| pip install -vv ./fabmos/extern/fabm | |
| - name: Compile and install fabmos | |
| run: | | |
| pip install -vv ./fabmos | |
| - name: Install fabmos dependencies | |
| run: | | |
| conda install -c conda-forge h5py | |
| - name: Download and extract TMM setup | |
| run: | | |
| wget -q http://kelvin.earth.ox.ac.uk/spk/Research/TMM/TransportMatrixConfigs/MITgcm_2.8deg.tar | |
| tar -xvf MITgcm_2.8deg.tar | |
| - name: Run TMM setup in serial | |
| run: | | |
| cd MITgcm_2.8deg | |
| python ../fabmos/examples/tmm/tracer.py --stop_time="2000-02-01 00:00:00" | |
| - name: Run TMM setup in parallel | |
| run: | | |
| cd MITgcm_2.8deg | |
| mpiexec -n 2 python ../fabmos/examples/tmm/tracer.py --stop_time="2000-02-01 00:00:00" | |
| conda: | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| RDMAV_FORK_SAFE: 1 | |
| defaults: | |
| run: | |
| shell: bash -el {0} | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: ["ubuntu-latest", "macos-latest", "windows-latest"] | |
| python-version: ["3.8", "3.9", "3.10", "3.11"] | |
| steps: | |
| - name: Clone fabmos | |
| uses: actions/checkout@v4 | |
| with: | |
| submodules: recursive | |
| - uses: conda-incubator/setup-miniconda@v3 | |
| with: | |
| auto-update-conda: true | |
| python-version: ${{ matrix.python-version }} | |
| environment-file: ${{ matrix.os == 'windows-latest' && 'environment-win.yml' || 'environment.yml' }} | |
| activate-environment: fabmos | |
| - name: Customize Windows build | |
| if: matrix.os == 'windows-latest' | |
| run: | | |
| echo '[build_ext]' > setup.cfg | |
| echo 'cmake_opts=-G "MSYS Makefiles"' >> setup.cfg | |
| mv extern/fabm/extern/ersem extern/fabm/extern/ersem_bck | |
| - name: Build and install | |
| run: pip install . -vv |