Edit constraint on trace's encoding format (#5132)

* edit constraint on trace's encoding format * add non-nwb distribution in trace
BlueBrain · Sep 11, 2024 · 442e077 · 442e077
1 parent f3d3e34
commit 442e077
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Showing 2 changed files with 34 additions and 10 deletions.
diff --git a/tests/docker/config/construct-query.sparql b/tests/docker/config/construct-query.sparql
@@ -268,11 +268,12 @@ CONSTRUCT {
  FILTER (?type != prov:Entity)
 
  # for Traces, only consider ones that have the nwb encoding format
- FILTER NOT EXISTS {
- ?id a nsg:Trace ;
- schema:distribution / schema:encodingFormat ?encodingFormat .
- FILTER (?encodingFormat != "application/nwb")
- }
+ OPTIONAL {
+ ?id a bmo:ExperimentalTrace ;
+ schema:distribution/schema:encodingFormat ?encodingFormat .
+ } .
+
+ FILTER(!bound(?encodingFormat) || ?encodingFormat = "application/nwb") .
 
  ?id nxv:createdAt ?createdAt ;
  nxv:createdBy ?createdByNode ;

diff --git a/tests/src/test/resources/kg/search/data/trace.json b/tests/src/test/resources/kg/search/data/trace.json
@@ -78,11 +78,33 @@
  "@value": "2021-05-18T18:59:02.602182+02:00"
  },
  "description": "This dataset is about simulated electrophysiology traces for cell instance S1J_L6_IPC_cADpyr_2. The dataset contains one distribution of the traces in NWB file format.",
- "distribution": {
+ "distribution": [
+ {
+ "@type": "DataDownload",
+ "atLocation": {
+ "@type": "Location",
+ "location": "file:///gpfs/bbp.cscs.ch/data/project/proj109/nexus/public/sscx/e/1/0/5/5/9/1/c/S1J_L6_IPC_cADpyr_2.nwb",
+ "store": {
+ "@id": "https://bbp.epfl.ch/neurosciencegraph/data/4820323e-bee0-48d2-824f-9d9d404dbbee"
+ }
+ },
+ "contentSize": {
+ "unitCode": "bytes",
+ "value": 1657656
+ },
+ "contentUrl": "https://bbp.epfl.ch/nexus/v1/files/public/sscx/5b24efb8-ce68-4ce7-afa6-53b8d8ea9a01",
+ "digest": {
+ "algorithm": "SHA-256",
+ "value": "9dfe31ab52dd636987a610b9ac70f6ca28f03331d75a17624a4308a1d64266fc"
+ },
+ "encodingFormat": "application/nwb",
+ "name": "S1J_L6_IPC_cADpyr_2.nwb"
+ },
+ {
  "@type": "DataDownload",
  "atLocation": {
  "@type": "Location",
- "location": "file:///gpfs/bbp.cscs.ch/data/project/proj109/nexus/public/sscx/e/1/0/5/5/9/1/c/S1J_L6_IPC_cADpyr_2.nwb",
+ "location": "file:///gpfs/bbp.cscs.ch/data/project/proj109/nexus/public/sscx/e/1/0/5/5/9/1/c/S1J_L6_IPC_cADpyr_2.abf",
  "store": {
  "@id": "https://bbp.epfl.ch/neurosciencegraph/data/4820323e-bee0-48d2-824f-9d9d404dbbee"
  }
@@ -96,9 +118,10 @@
  "algorithm": "SHA-256",
  "value": "9dfe31ab52dd636987a610b9ac70f6ca28f03331d75a17624a4308a1d64266fc"
  },
- "encodingFormat": "application/nwb",
- "name": "S1J_L6_IPC_cADpyr_2.nwb"
- },
+ "encodingFormat": "application/abf",
+ "name": "S1J_L6_IPC_cADpyr_2.abf"
+ }
+ ],
  "image": [
  {
  "@id": "https://bbp.epfl.ch/neurosciencegraph/data/58342dff-8034-4b53-933b-1c034cdc8180",