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Temporary fix waiting for PyPi cell-densities-validations
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@@ -39,8 +39,9 @@ RUN pip install git+https://github.com/BlueBrain/[email protected] | |
# densities validation | ||
#RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ "densities-validation>=0.1.1" | ||
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# leaves-only | ||
RUN pip install git+https://github.com/BlueBrain/cell-density-validations.git #@v0.2.1 | ||
# leaves-only @v0.2.1 | ||
RUN git clone https://github.com/BlueBrain/cell-density-validations.git cell_densities_validations && \ | ||
pip install cell_densities_validations/cell-densities/ | ||
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# module load py-bba-webexporter | ||
RUN pip install git+https://github.com/BlueBrain/[email protected] | ||
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@@ -1,10 +1,13 @@ | ||
pytest | ||
pytest-cov | ||
pyyaml | ||
nexusforge>=0.8.2 | ||
click | ||
sphinx | ||
sphinx-bluebrain-theme | ||
myst-parser | ||
numpy | ||
pynrrd | ||
pyyaml | ||
voxcell | ||
pulp==2.7.0 # snakemake 7.32.3 breaks with pulp==2.8.0 | ||
snakemake==7.32.3 | ||
click | ||
blue-cwl | ||
pipeline-validator>=0.3.1 | ||
python-gitlab |