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Temporary fix waiting for PyPi cell-densities-validations
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lecriste committed Nov 26, 2024
1 parent 47977ff commit 77d9ced
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5 changes: 3 additions & 2 deletions Dockerfile
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Expand Up @@ -39,8 +39,9 @@ RUN pip install git+https://github.com/BlueBrain/[email protected]
# densities validation
#RUN pip install -i https://bbpteam.epfl.ch/repository/devpi/simple/ "densities-validation>=0.1.1"

# leaves-only
RUN pip install git+https://github.com/BlueBrain/cell-density-validations.git #@v0.2.1
# leaves-only @v0.2.1
RUN git clone https://github.com/BlueBrain/cell-density-validations.git cell_densities_validations && \
pip install cell_densities_validations/cell-densities/

# module load py-bba-webexporter
RUN pip install git+https://github.com/BlueBrain/[email protected]
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13 changes: 8 additions & 5 deletions requirements.txt
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@@ -1,10 +1,13 @@
pytest
pytest-cov
pyyaml
nexusforge>=0.8.2
click
sphinx
sphinx-bluebrain-theme
myst-parser
numpy
pynrrd
pyyaml
voxcell
pulp==2.7.0 # snakemake 7.32.3 breaks with pulp==2.8.0
snakemake==7.32.3
click
blue-cwl
pipeline-validator>=0.3.1
python-gitlab

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