A nextflow pipeline to stitch Harmony exports into ome.tiffs with customized file names/rendering
You'll need the spreadsheet (.xlsx), the acapella docker image and have conda installed:
Use docker load --input /nfs/team283_imaging/0Misc/Acapella_stitching/acapella-1.1.7 to load the docker images
If you want to run the stitching locally, modify the parameters in run.sh and run it with bash run.sh
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