Build Container Images #89
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name: Build Container Images | |
on: | |
workflow_dispatch: | |
push: | |
paths: | |
- "**/Dockerfile" | |
schedule: | |
- cron: '0 0 */2 * *' | |
# Avoids Github UI bugs https://github.com/orgs/community/discussions/45969 | |
env: | |
BUILDX_NO_DEFAULT_ATTESTATIONS: 1 | |
jobs: | |
ghcrbuild: | |
strategy: | |
fail-fast: false | |
matrix: | |
type: [builder, user] | |
ubuntu: ['jammy'] #[focal, jammy] | |
platform: [linux/amd64] | |
biocversion: ['3.18'] | |
name: Build container images for GHCR | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Extract metadata for container image | |
id: meta | |
uses: docker/metadata-action@v4 | |
with: | |
images: ghcr.io/${{ github.repository }}-${{ matrix.type }} | |
tags: | | |
type=raw,value=${{ matrix.ubuntu }} | |
- name: Extract container name without tag | |
id: vars | |
run: | | |
echo container=$(echo '${{ steps.meta.outputs.tags }}' | awk -F':' '{print $1}') >> $GITHUB_OUTPUT | |
- name: Set up QEMU | |
uses: docker/setup-qemu-action@v2 | |
with: | |
platforms: arm64 | |
if: contains(steps.versions.outputs.platform, 'arm64') | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v2 | |
with: | |
platforms: ${{matrix.platform}} | |
- name: Login to GHCR | |
uses: docker/login-action@v2 | |
with: | |
registry: ghcr.io | |
username: ${{ github.repository_owner }} | |
password: ${{ secrets.GITHUB_TOKEN }} | |
- name: Build and push container image to ghcr | |
id: build | |
uses: docker/build-push-action@v4 | |
with: | |
build-args: | | |
UBUNTU_TAG=${{matrix.ubuntu}} | |
BIOC_VERSION=${{matrix.biocversion}} | |
file: ${{ matrix.type }}.Dockerfile | |
labels: ${{ steps.meta.outputs.labels }} | |
outputs: type=image,name=${{ steps.vars.outputs.container }},push-by-digest=true,name-canonical=true,push=true | |
platforms: ${{matrix.platform}} | |
provenance: false | |
- name: Prepare Dockerfile to extract R version with emulator | |
run: | | |
mkdir -p ${{matrix.ubuntu}}-${{matrix.platform}} | |
cat << "EOF" > ${{matrix.ubuntu}}-${{matrix.platform}}-r.Dockerfile | |
FROM ${{ steps.vars.outputs.container }}@${{ steps.build.outputs.digest }} as extract | |
RUN mkdir /r2utmp && R --version > /r2utmp/rver && cat /etc/os-release > /r2utmp/os-release | |
FROM scratch as export | |
COPY --from=extract /r2utmp/* / | |
EOF | |
- name: Build and push container image to ghcr | |
uses: docker/build-push-action@v4 | |
with: | |
file: ${{matrix.ubuntu}}-${{matrix.platform}}-r.Dockerfile | |
context: . | |
push: false | |
load: false | |
provenance: false | |
outputs: type=tar,dest=${{matrix.ubuntu}}-${{matrix.platform}}/r.tar | |
tags: ${{ steps.meta.outputs.tags }}-r | |
platforms: ${{ matrix.platform }} | |
- name: Extract rversion | |
id: versions | |
run: | | |
cd ${{matrix.ubuntu}}-${{matrix.platform}} | |
tar -xvf r.tar | |
echo rver=$(cat rver | awk 'NR==1{print $3}') >> $GITHUB_OUTPUT | |
echo osver=$(awk -F= '/VERSION_ID/ {gsub("\"", "", $2); print $2}' os-release) >> $GITHUB_OUTPUT | |
- name: Export digest by ubuntu, r, and bioc versions | |
run: | | |
digest="${{ steps.build.outputs.digest }}" | |
mkdir -p /tmp/digests/${{matrix.type}}/${{matrix.ubuntu}} | |
touch "/tmp/digests/${{matrix.type}}/${{matrix.ubuntu}}/${digest#sha256:}" | |
mkdir -p /tmp/digests/${{matrix.type}}/${{matrix.ubuntu}}-r-${{steps.versions.outputs.rver}} | |
touch "/tmp/digests/${{matrix.type}}/${{matrix.ubuntu}}-r-${{steps.versions.outputs.rver}}/${digest#sha256:}" | |
mkdir -p /tmp/digests/${{matrix.type}}/${{steps.versions.outputs.osver}} | |
touch "/tmp/digests/${{matrix.type}}/${{steps.versions.outputs.osver}}/${digest#sha256:}" | |
mkdir -p /tmp/digests/${{matrix.type}}/${{steps.versions.outputs.osver}}-r-${{steps.versions.outputs.rver}} | |
touch "/tmp/digests/${{matrix.type}}/${{steps.versions.outputs.osver}}-r-${{steps.versions.outputs.rver}}/${digest#sha256:}" | |
mkdir -p /tmp/digests/${{matrix.type}}/${{matrix.ubuntu}}-bioc-${{matrix.biocversion}} | |
touch "/tmp/digests/${{matrix.type}}/${{matrix.ubuntu}}-bioc-${{matrix.biocversion}}/${digest#sha256:}" | |
mkdir -p /tmp/digests/${{matrix.type}}/${{matrix.ubuntu}}-bioc-${{matrix.biocversion}}-r-${{steps.versions.outputs.rver}} | |
touch "/tmp/digests/${{matrix.type}}/${{matrix.ubuntu}}-bioc-${{matrix.biocversion}}-r-${{steps.versions.outputs.rver}}/${digest#sha256:}" | |
mkdir -p /tmp/digests/${{matrix.type}}/${{steps.versions.outputs.osver}}-bioc-${{matrix.biocversion}} | |
touch "/tmp/digests/${{matrix.type}}/${{steps.versions.outputs.osver}}-bioc-${{matrix.biocversion}}/${digest#sha256:}" | |
mkdir -p /tmp/digests/${{matrix.type}}/${{steps.versions.outputs.osver}}-bioc-${{matrix.biocversion}}-r-${{steps.versions.outputs.rver}} | |
touch "/tmp/digests/${{matrix.type}}/${{steps.versions.outputs.osver}}-bioc-${{matrix.biocversion}}-r-${{steps.versions.outputs.rver}}/${digest#sha256:}" | |
- name: Upload digests | |
uses: actions/upload-artifact@v3 | |
with: | |
name: r2udigests-${{ github.run_id }} | |
path: /tmp/digests/** | |
if-no-files-found: error | |
retention-days: 1 | |
merge: | |
runs-on: ubuntu-latest | |
needs: | |
- ghcrbuild | |
if: always() | |
strategy: | |
fail-fast: false | |
matrix: | |
ubuntu: [focal, jammy] | |
type: [builder, user] | |
steps: | |
- name: Download digests | |
uses: actions/download-artifact@v3 | |
with: | |
name: r2udigests-${{ github.run_id }} | |
path: /tmp/digests | |
- name: Set up Docker Buildx | |
uses: docker/setup-buildx-action@v2 | |
with: | |
platforms: ${{matrix.platform}} | |
- name: Login to GHCR | |
uses: docker/login-action@v2 | |
with: | |
registry: ghcr.io | |
username: ${{ github.repository_owner }} | |
password: ${{ secrets.GITHUB_TOKEN }} | |
- name: Extract metadata for container image | |
id: meta | |
uses: docker/metadata-action@v4 | |
with: | |
images: ghcr.io/${{ github.repository }}-${{ matrix.type }} | |
tags: | | |
type=raw,value=${{ matrix.ubuntu }} | |
- name: Extract container name without tag | |
id: vars | |
run: | | |
echo container=$(echo '${{ steps.meta.outputs.tags }}' | awk -F':' '{print $1}') >> $GITHUB_OUTPUT | |
- name: Create manifest list and push | |
run: | | |
cd /tmp/digests/${{matrix.type}} | |
ls --hide=digestdirs > digestdirs | |
cat digestdirs | xargs -i bash -c 'docker buildx imagetools create -t ${{steps.vars.outputs.container}}:{} $(for f in {}/*; do basename "$f"; done | xargs printf "${{steps.vars.outputs.container}}@sha256:%s ")' |