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This repository has been archived by the owner on Jul 19, 2021. It is now read-only.
Hello,
I have these files with rRNAs. I have build my own custom silva database to eliminate them. However, the memory requirements appear to be quite high.
Also, I have noticed the rqcfilter.sh
I have found the riboKmers.fa.gz file testing bbduk. But, still the memory is quite high to use it.
What is your thought I the best way to filter rRNAs from metatranscriptomes with lowest memory and speed?
Is it better to use bbduk or rqcfilter?
Many thanks
Rick
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