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@BioInfoTools

BioInfoTools

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  1. BBMap BBMap Public archive

    (Not Offical) BBMap short read aligner, and other bioinformatic tools.

    Java 214 111

  2. BSVF BSVF Public

    Bisulfite Sequencing Virus integration Finder

    C 3 5

  3. GCE GCE Public

    GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size ,genomic repeat content and the heterozygsis rate of the sequencing sample.

    Perl 2 2

  4. symap symap Public

    Automatically exported from code.google.com/p/symap

    Java 1

  5. EIG EIG Public

    Forked from DReichLab/EIG

    Eigen tools by Nick Patterson and Alkes Price lab

    C 1

  6. blobtools blobtools Public

    Forked from DRL/blobtools

    Application for the visualisation of draft genome assemblies and general QC

    Python 1

Repositories

Showing 10 of 36 repositories
  • BBMap Public archive

    (Not Offical) BBMap short read aligner, and other bioinformatic tools.

    BioInfoTools/BBMap’s past year of commit activity
    Java 214 111 28 1 Updated Feb 11, 2021
  • atropos Public Forked from jdidion/atropos

    An NGS read trimming tool that is specific, sensitive, and speedy. (production)

    BioInfoTools/atropos’s past year of commit activity
    Python 0 15 0 0 Updated Dec 7, 2020
  • GCE Public

    GCE (genomic charactor estimator) is a bayes model based method to estimate the genome size ,genomic repeat content and the heterozygsis rate of the sequencing sample.

    BioInfoTools/GCE’s past year of commit activity
    Perl 2 GPL-3.0 2 0 0 Updated Feb 26, 2020
  • BSVF Public

    Bisulfite Sequencing Virus integration Finder

    BioInfoTools/BSVF’s past year of commit activity
    C 3 LGPL-3.0 5 0 0 Updated Nov 29, 2019
  • samtools Public Forked from samtools/samtools

    Tools (written in C using htslib) for manipulating next-generation sequencing data

    BioInfoTools/samtools’s past year of commit activity
    C 1 584 0 0 Updated Sep 11, 2018
  • bcftools Public Forked from samtools/bcftools

    This is the official development repository for BCFtools. To compile, the develop branch of htslib is needed: git clone --branch=develop git://github.com/samtools/htslib.git htslib

    BioInfoTools/bcftools’s past year of commit activity
    C 0 243 0 0 Updated Aug 15, 2018
  • gclib Public Forked from gpertea/gclib

    GCLib - Genomic C(++) library of reusable code for bioinformatics projects

    BioInfoTools/gclib’s past year of commit activity
    C++ 0 13 0 0 Updated Jul 19, 2018
  • csvtk Public Forked from shenwei356/csvtk

    A cross-platform, efficient, practical and pretty CSV/TSV toolkit in Golang

    BioInfoTools/csvtk’s past year of commit activity
    Go 0 MIT 89 0 0 Updated Dec 19, 2017
  • fastp Public Forked from OpenGene/fastp

    A Fast and All-in-one Preprocessor for FastQ files

    BioInfoTools/fastp’s past year of commit activity
    C 0 MIT 336 0 0 Updated Nov 9, 2017
  • kallisto Public Forked from pachterlab/kallisto

    Near-optimal RNA-Seq quantification

    BioInfoTools/kallisto’s past year of commit activity
    C++ 0 176 0 0 Updated Jul 15, 2017
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