This is the shared git repo for the genome analysis of Pst_104E_genome.
The folders contain the following:
Assembly -> Assembly as used in the first manuscript version and submitted to NCBI with Bioproject PRJNA396589
gene_expression -> contains all scripts used for expression analysis by Jana Sperschneider
LICENSE
notebooks -> contains all jupyter notebooks described in the methods section
Secretomes -> contains secrectome and EffectorP analysis of Pst_104E and other cereal rusts
supplemental_files -> contains the supplemental files of the manuscript.