Merge pull request #322 from betsig/master

[ci skip]

This build is based on
46bcdfb.

This commit was created by the following CI build and job:
https://github.com/Benjamin-Lee/deep-rules/commit/46bcdfbe4c3908b46f14d5112dafd6a25138a371/checks
https://github.com/Benjamin-Lee/deep-rules/runs/529226465

manuscript.html

@@ -125,8 +125,8 @@
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-  <meta name="citation_author_institution" content="Climate Change Cluster, University of Technology Sydney" />
-  <meta name="citation_author_orcid" content="None" />
+  <meta name="citation_author_institution" content="School of Medicine, College of Health and Medicine, University of Tasmania" />
+  <meta name="citation_author_orcid" content="0000-0002-6839-2392" />
   <meta name="citation_author" content="Juan Jose Carmona" />
   <meta name="citation_author_institution" content="Philips Healthcare" />
   <meta name="citation_author_institution" content="Philips Research North America" />
@@ -138,13 +138,13 @@
   <meta name="citation_fulltext_html_url" content="https://Benjamin-Lee.github.io/deep-rules/" />
   <meta name="citation_pdf_url" content="https://Benjamin-Lee.github.io/deep-rules/manuscript.pdf" />
   <link rel="alternate" type="application/pdf" href="https://Benjamin-Lee.github.io/deep-rules/manuscript.pdf" />
-  <link rel="alternate" type="text/html" href="https://Benjamin-Lee.github.io/deep-rules/v/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/" />
-  <meta name="manubot_html_url_versioned" content="https://Benjamin-Lee.github.io/deep-rules/v/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/" />
-  <meta name="manubot_pdf_url_versioned" content="https://Benjamin-Lee.github.io/deep-rules/v/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/manuscript.pdf" />
+  <link rel="alternate" type="text/html" href="https://Benjamin-Lee.github.io/deep-rules/v/46bcdfbe4c3908b46f14d5112dafd6a25138a371/" />
+  <meta name="manubot_html_url_versioned" content="https://Benjamin-Lee.github.io/deep-rules/v/46bcdfbe4c3908b46f14d5112dafd6a25138a371/" />
+  <meta name="manubot_pdf_url_versioned" content="https://Benjamin-Lee.github.io/deep-rules/v/46bcdfbe4c3908b46f14d5112dafd6a25138a371/manuscript.pdf" />
   <meta property="og:type" content="article" />
   <meta property="twitter:card" content="summary_large_image" />
-  <meta property="og:image" content="https://github.com/Benjamin-Lee/deep-rules/raw/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/content/images/thumbnail_tips_overview.png" />
-  <meta property="twitter:image" content="https://github.com/Benjamin-Lee/deep-rules/raw/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/content/images/thumbnail_tips_overview.png" />
+  <meta property="og:image" content="https://github.com/Benjamin-Lee/deep-rules/raw/46bcdfbe4c3908b46f14d5112dafd6a25138a371/content/images/thumbnail_tips_overview.png" />
+  <meta property="twitter:image" content="https://github.com/Benjamin-Lee/deep-rules/raw/46bcdfbe4c3908b46f14d5112dafd6a25138a371/content/images/thumbnail_tips_overview.png" />
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@@ -156,9 +156,9 @@ <h1 class="title">Ten Quick Tips for Deep Learning in Biology</h1>
 </header>
 <p><small><em>
 This manuscript
-(<a href="https://Benjamin-Lee.github.io/deep-rules/v/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/">permalink</a>)
+(<a href="https://Benjamin-Lee.github.io/deep-rules/v/46bcdfbe4c3908b46f14d5112dafd6a25138a371/">permalink</a>)
 was automatically generated
-from <a href="https://github.com/Benjamin-Lee/deep-rules/tree/3dc13acbcf1582fd80c755076ce307c0a9e1db4a">Benjamin-Lee/deep-rules@3dc13ac</a>
+from <a href="https://github.com/Benjamin-Lee/deep-rules/tree/46bcdfbe4c3908b46f14d5112dafd6a25138a371">Benjamin-Lee/deep-rules@46bcdfb</a>
 on February 1, 2021.
 </em></small></p>
 <h2 id="authors">Authors</h2>
@@ -318,10 +318,12 @@ <h2 id="authors">Authors</h2>
 Genomics and Computational Biology Graduate Program, University of Pennsylvania; Department of Systems Pharmacology and Translational Therapeutics, University of Pennsylvania
 </small></p></li>
 <li><p><strong>Beth Signal</strong><br>
+<img src="images/orcid.svg" class="inline_icon" alt="ORCID icon" />
+<a href="https://orcid.org/0000-0002-6839-2392">0000-0002-6839-2392</a>
 · <img src="images/github.svg" class="inline_icon" alt="GitHub icon" />
 <a href="https://github.com/betsig">betsig</a><br>
 <small>
-Climate Change Cluster, University of Technology Sydney
+School of Medicine, College of Health and Medicine, University of Tasmania
 </small></p></li>
 <li><p><strong>Juan Jose Carmona</strong><br>
 <img src="images/orcid.svg" class="inline_icon" alt="ORCID icon" />

manuscript.md

@@ -197,9 +197,9 @@ header-includes: '<!--
 
   <meta name="citation_author" content="Beth Signal" />
 
-  <meta name="citation_author_institution" content="Climate Change Cluster, University of Technology Sydney" />
+  <meta name="citation_author_institution" content="School of Medicine, College of Health and Medicine, University of Tasmania" />
 
-  <meta name="citation_author_orcid" content="None" />
+  <meta name="citation_author_orcid" content="0000-0002-6839-2392" />
 
   <meta name="citation_author" content="Juan Jose Carmona" />
 
@@ -223,19 +223,19 @@ header-includes: '<!--
 
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-  <link rel="alternate" type="text/html" href="https://Benjamin-Lee.github.io/deep-rules/v/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/" />
+  <link rel="alternate" type="text/html" href="https://Benjamin-Lee.github.io/deep-rules/v/46bcdfbe4c3908b46f14d5112dafd6a25138a371/" />
 
-  <meta name="manubot_html_url_versioned" content="https://Benjamin-Lee.github.io/deep-rules/v/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/" />
+  <meta name="manubot_html_url_versioned" content="https://Benjamin-Lee.github.io/deep-rules/v/46bcdfbe4c3908b46f14d5112dafd6a25138a371/" />
 
-  <meta name="manubot_pdf_url_versioned" content="https://Benjamin-Lee.github.io/deep-rules/v/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/manuscript.pdf" />
+  <meta name="manubot_pdf_url_versioned" content="https://Benjamin-Lee.github.io/deep-rules/v/46bcdfbe4c3908b46f14d5112dafd6a25138a371/manuscript.pdf" />
 
   <meta property="og:type" content="article" />
 
   <meta property="twitter:card" content="summary_large_image" />
 
-  <meta property="og:image" content="https://github.com/Benjamin-Lee/deep-rules/raw/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/content/images/thumbnail_tips_overview.png" />
+  <meta property="og:image" content="https://github.com/Benjamin-Lee/deep-rules/raw/46bcdfbe4c3908b46f14d5112dafd6a25138a371/content/images/thumbnail_tips_overview.png" />
 
-  <meta property="twitter:image" content="https://github.com/Benjamin-Lee/deep-rules/raw/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/content/images/thumbnail_tips_overview.png" />
+  <meta property="twitter:image" content="https://github.com/Benjamin-Lee/deep-rules/raw/46bcdfbe4c3908b46f14d5112dafd6a25138a371/content/images/thumbnail_tips_overview.png" />
 
   <link rel="icon" type="image/png" sizes="192x192" href="https://manubot.org/favicon-192x192.png" />
 
@@ -264,9 +264,9 @@ title: Ten Quick Tips for Deep Learning in Biology
 
 <small><em>
 This manuscript
-([permalink](https://Benjamin-Lee.github.io/deep-rules/v/3dc13acbcf1582fd80c755076ce307c0a9e1db4a/))
+([permalink](https://Benjamin-Lee.github.io/deep-rules/v/46bcdfbe4c3908b46f14d5112dafd6a25138a371/))
 was automatically generated
-from [Benjamin-Lee/deep-rules@3dc13ac](https://github.com/Benjamin-Lee/deep-rules/tree/3dc13acbcf1582fd80c755076ce307c0a9e1db4a)
+from [Benjamin-Lee/deep-rules@46bcdfb](https://github.com/Benjamin-Lee/deep-rules/tree/46bcdfbe4c3908b46f14d5112dafd6a25138a371)
 on February 1, 2021.
 </em></small>
 
@@ -447,10 +447,12 @@ Please note the current author order is chronological and does not reflect the f
   </small>
 
 + **Beth Signal**<br>
+    ![ORCID icon](images/orcid.svg){.inline_icon}
+    [0000-0002-6839-2392](https://orcid.org/0000-0002-6839-2392)
     · ![GitHub icon](images/github.svg){.inline_icon}
     [betsig](https://github.com/betsig)<br>
   <small>
-     Climate Change Cluster, University of Technology Sydney
+     School of Medicine, College of Health and Medicine, University of Tasmania
   </small>
 
 + **Juan Jose Carmona**<br>

spelling-errors.txt

@@ -40,7 +40,7 @@ CUDA
 CuDNN
 Dalhousie
 dataset
-datasets
+Datasets
 dataset’s
 differentiable
 discriminative
@@ -105,7 +105,7 @@ parallelized
 perceptrons
 pharmacovigilance
 phenotypes
-pre
+Pre
 pretraining
 pseudorandom
 pstew