Hdf5 update

CMakeLists.txt

@@ -124,17 +124,11 @@ OPTION(MT_BUILD_VISUAL_TOOLS "Build visual tools (Display, Register, postf, ray_
 OPTION(USE_SYSTEM_ITK        "Use System ITK" OFF)
 OPTION(MT_USE_OPENMP         "Use OpenMP multi-threading" OFF)
 OPTION(MT_BUILD_IM           "Build ImageMagick and dependent libraries" OFF)
-OPTION(MT_BUILD_QUIET        "Build quetly" OFF)
 OPTION(MT_BUILD_OPENBLAS     "Build OpenBLAS: will require fortran" OFF)
 #OPTION(MT_USE_OPENMP_BLAS    "Use Build OpenBLAS with OpenMP support" OFF) # TODO: finish this to compile on some platforms
 
 SET(MT_PACKAGES_PATH "${CMAKE_BINARY_DIR}/cache" CACHE PATH  "Directory containing 3rd party packages")
 
-# trying to reduce verbosity
-IF(MT_BUILD_QUIET)
-  set_property(GLOBAL PROPERTY RULE_MESSAGES OFF)
-ENDIF(MT_BUILD_QUIET)
-
 IF(MT_BUILD_LITE)
   SET(MT_BUILD_ITK_TOOLS    OFF)
   SET(MT_BUILD_VISUAL_TOOLS OFF)

cmake-modules/BuildANTS.cmake

@@ -51,18 +51,13 @@ macro(build_ANTS install_prefix staging_prefix itk_dir ) #boost_dir
 #      -DCMAKE_CXX_COMPILER:FILEPATH=${ITK_CXX_COMPILER}
     )
   endif()
-  #SET(PATCH_QUIET "")
-  #if(MT_BUILD_QUIET)
-    SET(PATCH_QUIET patch -p0 -t -N -i ${CMAKE_SOURCE_DIR}/cmake-modules/quiet_cmake_ccache.patch)
-  #endif(MT_BUILD_QUIET)
 
   ExternalProject_Add(ANTS
     #GIT_REPOSITORY "https://github.com/vfonov/ANTs.git"
     #GIT_TAG "69d3a5a6c7125ccf07a9e9cf6ef29f0b91e9514f"
     #UPDATE_COMMAND ""
     SOURCE_DIR ${CMAKE_SOURCE_DIR}/ANTs
     BINARY_DIR ANTS-build
-    #PATCH_COMMAND ${PATCH_QUIET}
     LIST_SEPARATOR :::  
     CMAKE_GENERATOR ${CMAKE_GEN}
     CMAKE_ARGS

cmake-modules/BuildC3D.cmake

@@ -52,11 +52,6 @@ macro(build_C3D install_prefix staging_prefix)
     )
   endif()
 
-  #SET(PATCH_QUIET "")
-  #if(MT_BUILD_QUIET)
-    SET(PATCH_QUIET patch -p0 -t -N -i ${CMAKE_SOURCE_DIR}/cmake-modules/quiet_cmake_ccache.patch)
-  #endif(MT_BUILD_QUIET)
-
   GET_PACKAGE("https://github.com/vfonov/Convert3D/archive/v0.0.tar.gz" "a9f346f14171297dc28b530590be8754" "c3d-v0.0.tar.gz" C3D_PATH ) 
 
   ExternalProject_Add(C3D
@@ -65,7 +60,6 @@ macro(build_C3D install_prefix staging_prefix)
     UPDATE_COMMAND ""
     SOURCE_DIR C3D
     BINARY_DIR C3D-build
-    PATCH_COMMAND ${PATCH_QUIET}
     LIST_SEPARATOR :::  
     CMAKE_GENERATOR ${CMAKE_GEN}
     CMAKE_ARGS

cmake-modules/BuildHDF5.cmake

@@ -61,19 +61,14 @@ macro(build_hdf5 install_prefix staging_prefix)
 
   SET(HDF_CMAKE_CXX_FLAGS "-fPIC ${CMAKE_CXX_FLAGS}")
   SET(HDF_CMAKE_C_FLAGS   "-fPIC ${CMAKE_C_FLAGS}")
-
-  #SET(PATCH_QUIET "")
-  #if(MT_BUILD_QUIET)
-  #SET(PATCH_QUIET patch -p0 -t -N -i ${CMAKE_SOURCE_DIR}/cmake-modules/quiet_cmake_ccache.patch)
-  #endif(MT_BUILD_QUIET)
-  GET_PACKAGE("https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.5/src/hdf5-1.10.5.tar.bz2" "7c19d6b81ee2a3ba7d36f6922b2f90d3" "hdf5-1.10.5.tar.bz2" HDF5_PATH ) 
+
+  GET_PACKAGE("https://support.hdfgroup.org/ftp/HDF5/releases/hdf5-1.10/hdf5-1.10.6/src/hdf5-1.10.6.tar.bz2" "03095102a6118c32a75a9b9b40be66f2" "hdf5-1.10.6.tar.bz2" HDF5_PATH )
 
 ExternalProject_Add(HDF5
   URL "${HDF5_PATH}"
-  URL_MD5 "7c19d6b81ee2a3ba7d36f6922b2f90d3"
+  URL_MD5 "03095102a6118c32a75a9b9b40be66f2"
   SOURCE_DIR HDF5
   BINARY_DIR HDF5-build
-  PATCH_COMMAND ${PATCH_QUIET}
   CMAKE_GENERATOR ${CMAKE_GEN}
   CMAKE_ARGS
       -DBUILD_TESTING:BOOL=OFF #${BUILD_TESTING}

cmake-modules/BuildITKv4.cmake

@@ -70,13 +70,6 @@ macro(build_itkv4 install_prefix staging_prefix minc_dir)
     )
   ENDIF()
 
-  SET(PATCH_QUIET "")
-  #if(MT_BUILD_QUIET)
-  IF(NOT APPLE)
-    SET(PATCH_QUIET patch -p0 -t -N -i ${CMAKE_SOURCE_DIR}/cmake-modules/quiet_cmake_ccache.patch)
-  ENDIF(NOT APPLE)
-  #endif(MT_BUILD_QUIET)
-
   SET(HDF5_LIB_SUFFIX ".a")
 
   IF(MT_BUILD_SHARED_LIBS)
@@ -145,7 +138,6 @@ macro(build_itkv4 install_prefix staging_prefix minc_dir)
     UPDATE_COMMAND ""
     SOURCE_DIR ITKv4
     BINARY_DIR ITKv4-build
-    PATCH_COMMAND ${PATCH_QUIET}
     CMAKE_GENERATOR ${CMAKE_GEN}
     CMAKE_ARGS
         -DCMAKE_BUILD_TYPE:STRING=${CMAKE_BUILD_TYPE}

cmake-modules/BuildLIBLBFGS.cmake

@@ -51,17 +51,11 @@ macro(build_liblbfgs install_prefix staging_prefix)
     )
   endif()
 
-  #SET(PATCH_QUIET "")
-  #if(MT_BUILD_QUIET)
-    SET(PATCH_QUIET patch -p0 -t -N -i ${CMAKE_SOURCE_DIR}/cmake-modules/quiet_cmake_ccache.patch)
-  #endif(MT_BUILD_QUIET)
-
   GET_PACKAGE("https://github.com/vfonov/liblbfgs/archive/v1.10-cmake.tar.gz" "1261b1c21eed98617e3b92019cf9b1c5" "liblbfgs-v1.10-cmake.tar.gz" LIBLBFGS_PATH ) 
 
   ExternalProject_Add(LIBLBFGS
     SOURCE_DIR LIBLBFGS
     BINARY_DIR LIBLBFGS-build
-    PATCH_COMMAND ${PATCH_QUIET}
     URL "${LIBLBFGS_PATH}"
     URL_MD5 "1261b1c21eed98617e3b92019cf9b1c5"
     CMAKE_GENERATOR ${CMAKE_GEN}

cmake-modules/BuildNETCDF.cmake

@@ -53,19 +53,13 @@ macro(build_netcdf install_prefix staging_prefix)
     )
   endif()
 
-  #SET(PATCH_QUIET "")
-  #if(MT_BUILD_QUIET)
-  #  SET(PATCH_QUIET patch -p0 -t -N -i ${CMAKE_SOURCE_DIR}/cmake-modules/quiet_cmake_ccache.patch)
-  #endif(MT_BUILD_QUIET)
-
   GET_PACKAGE("https://github.com/Unidata/netcdf-c/archive/v4.6.3.tar.gz" "5456da531d5e3f877e5ea328645b1e68" "netcdf-v4.6.3.tar.gz" NETCDF_PATH ) 
 
   ExternalProject_Add(NETCDF
     URL "${NETCDF_PATH}"
     URL_MD5 "5456da531d5e3f877e5ea328645b1e68"
   SOURCE_DIR NETCDF
   BINARY_DIR NETCDF-build
-  PATCH_COMMAND ${PATCH_QUIET}
   LIST_SEPARATOR :::
   CMAKE_GENERATOR ${CMAKE_GEN}
   CMAKE_ARGS