add workflows for publishing and unit testing #12
Workflow file for this run
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| name: Unit Tests & Code Coverage | |
| on: | |
| # Triggers the workflow on push or pull request events but only for the main branch | |
| push: | |
| branches: | |
| - main | |
| pull_request: | |
| branches: | |
| - main | |
| workflow_dispatch: # allow manual triggering | |
| defaults: | |
| run: | |
| shell: bash -l {0} | |
| jobs: | |
| lint: | |
| name: Code style | |
| runs-on: ubuntu-latest | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.11' | |
| - name: Install Dependencies | |
| run: | | |
| python -m pip install --upgrade pip | |
| pip install flake8 | |
| - name: Run flake8 | |
| run: flake8 | |
| - name: Run black | |
| uses: rickstaa/action-black@v1 | |
| with: | |
| black_args: ". --check" | |
| test-matrix: | |
| name: Python ${{ matrix.python-version }} | |
| runs-on: ubuntu-latest | |
| needs: lint | |
| strategy: | |
| matrix: | |
| python-version: | |
| # - "3.12" # not yet | |
| - "3.11" | |
| - "3.10" | |
| - "3.9" | |
| - "3.8" | |
| max-parallel: 5 | |
| env: | |
| DISPLAY: ':99.0' | |
| steps: | |
| - name: Checkout the repository | |
| uses: actions/checkout@v3 | |
| - name: Set timezone | |
| uses: szenius/[email protected] | |
| with: | |
| timezoneLinux: "America/Chicago" | |
| - name: Install OS libraries for workflow build | |
| run: | | |
| sudo apt update -y \ | |
| && sudo apt install -y \ | |
| libxcb-icccm4 \ | |
| libxcb-image0 \ | |
| libxcb-keysyms1 \ | |
| libxcb-randr0 \ | |
| libxcb-render-util0 \ | |
| libxcb-xinerama0 \ | |
| libxcb-xfixes0 \ | |
| libxkbcommon-x11-0 \ | |
| x11-utils | |
| # /sbin/start-stop-daemon \ | |
| # --start \ | |
| # --quiet \ | |
| # --pidfile /tmp/custom_xvfb_99.pid \ | |
| # --make-pidfile \ | |
| # --background \ | |
| # --exec /usr/bin/Xvfb -- \ | |
| # :99 \ | |
| # -screen 0 \ | |
| # 1920x1200x24 \ | |
| # -ac \ | |
| # +extension GLX | |
| - name: Create Python ${{ matrix.python-version }} environment | |
| uses: mamba-org/setup-micromamba@v1 | |
| with: | |
| cache-environment: true | |
| cache-environment-key: env-key-${{ matrix.python-version }} | |
| condarc: | | |
| channel-priority: flexible | |
| environment-file: env.yml | |
| environment-name: anaconda-test-env-py-${{ matrix.python-version }} | |
| create-args: >- | |
| coveralls | |
| pytest | |
| pytest-cov | |
| pytest-qt | |
| pytest-xvfb | |
| python=${{ matrix.python-version }} | |
| setuptools-scm | |
| - name: Initial diagnostics | |
| run: | | |
| micromamba info | |
| micromamba list | |
| conda config --show-sources | |
| conda config --show | |
| micromamba env list | |
| printenv | sort | |
| - name: Install this package | |
| shell: bash -l {0} | |
| run: pip install --no-deps -e . | |
| - name: Run tests with pytest & coverage | |
| shell: bash -l {0} | |
| run: | | |
| # coverage run --concurrency=thread --parallel-mode -m pytest -vvv --exitfirst . | |
| # coverage combine | |
| # coverage report --precision 3 | |
| pytest -vvv ./gemviz/tests/test_init.py ./gemviz/tests/test_utils.py | |
| # - name: Upload coverage data to coveralls.io | |
| # shell: bash -l {0} | |
| # run: | | |
| # micromamba list coveralls | |
| # which coveralls | |
| # coveralls debug | |
| # coveralls --service=github | |
| # env: | |
| # GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} | |
| # COVERALLS_FLAG_NAME: ${{ matrix.python-version }} | |
| # COVERALLS_PARALLEL: true | |
| # # https://coveralls-python.readthedocs.io/en/latest/usage/configuration.html#github-actions-support | |
| # coveralls: | |
| # name: Report unit test coverage to coveralls | |
| # needs: test-matrix | |
| # runs-on: ubuntu-latest | |
| # container: python:3-slim | |
| # steps: | |
| # - name: Gather coverage and report to Coveralls | |
| # run: | | |
| # echo "Finally!" | |
| # pip3 install --upgrade coveralls | |
| # # debug mode: output prepared json and reported files list to stdout | |
| # # https://coveralls-python.readthedocs.io/en/latest/troubleshooting.html | |
| # coveralls debug | |
| # coveralls --service=github --finish | |
| # env: | |
| # GITHUB_TOKEN: ${{ secrets.GITHUB_TOKEN }} |