Pilot Update

.dockerignore

@@ -1,4 +1,51 @@
 # modified configs
 config_development.json
 **/node_modules
-**/built
+**/built
+
+# docker volume data folders
+**/data
+
+# vscode config
+.vscode
+
+# Docs
+docs
+
+# Dependency directories
+node_modules/
+.editorconfig
+
+# Binaries
+platform-linux
+platform.exe
+platform-macos
+instant-linux
+instant.exe
+instant-macos
+
+# Dockerfiles
+platform-test-harness/PackageTest.dockerfile
+Dockerfile
+
+get-cli.sh
+
+test
+.env.*
+.github/
+.gitignore
+.git
+
+README.md
+
+ansible/
+
+# Go CLI Conf
+banner.txt
+config.yml
+
+# Infrastructure code
+infrastructure
+
+# Schemas
+schemas

.env.cluster

@@ -0,0 +1,98 @@
+# General
+
+CLUSTERED_MODE=true
+
+# Log
+
+DEBUG=1
+BASHLOG_FILE=0
+BASHLOG_FILE_PATH=platform.log
+
+# Interoperability Layer - OpenHIM
+OPENHIM_CORE_INSTANCES=3
+OPENHIM_CONSOLE_INSTANCES=3
+OPENHIM_CORE_MEDIATOR_HOSTNAME=openhimcomms.domain
+OPENHIM_MEDIATOR_API_PORT=443
+MONGO_SET_COUNT=3
+OPENHIM_MONGO_URL=mongodb://mongo-1:27017,mongo-2:27017,mongo-3:27017/openhim?replicaSet=mongo-set
+OPENHIM_MONGO_ATNAURL=mongodb://mongo-1:27017,mongo-2:27017,mongo-3:27017/openhim?replicaSet=mongo-set
+
+# FHIR Datastore - HAPI FHIR
+HAPI_FHIR_INSTANCES=3
+REPMGR_PARTNER_NODES=postgres-1,postgres-2,postgres-3
+POSTGRES_REPLICA_SET=postgres-1:5432,postgres-2:5432,postgres-3:5432
+
+# Sante Datastore - Sante MPI
+REPMGR_PARTNER_NODES=santempi-psql-1,santempi-psql-2,santempi-psql-3
+
+# Reverse Proxy - Nginx
+REVERSE_PROXY_INSTANCES=3
+DOMAIN_NAME=domain
+SUBDOMAINS=openhimcomms.domain,openhimcore.domain,openhimconsole.domain,kibana.domain,reports.domain,santewww.domain,santempi.domain,superset.domain,keycloak.domain,grafana.domain,minio.domain,jempi-web.domain,jempi-api.domain
+STAGING=true
+INSECURE=false
+
+# Analytics Datastore - Elastic Search
+ES_HEAP_SIZE=-Xms8192m -Xmx8192m
+ES_LEADER_NODE=analytics-datastore-elastic-search-01
+ES_HOSTS="\"analytics-datastore-elastic-search-01:9200","analytics-datastore-elastic-search-02:9200","analytics-datastore-elastic-search-03:9200\""
+
+# Analytics Datastore - Clickhouse
+CLICKHOUSE_HOST=analytics-datastore-clickhouse-01
+
+# Dashboard Visualiser - Kibana
+KIBANA_INSTANCES=1
+
+# Data Mapper - Logstash
+LS_JAVA_OPTS=-Xmx6144m -Xms6144m
+LOGSTASH_INSTANCES=3
+LOGSTASH_DEV_MOUNT=false
+LOGSTASH_PACKAGE_PATH=
+
+# Dashboard Visualiser - JS Reports
+JS_REPORT_INSTANCES=1
+JS_REPORT_LICENSE_KEY=
+
+# MAKE SURE YOU HAVE RUN 'set-permissions.sh' SCRIPT BEFORE AND AFTER RUNNING JS REPORT
+JS_REPORT_DEV_MOUNT=false
+JS_REPORT_PACKAGE_PATH=
+
+# Message Bus Kafka
+# Topics should comma seperated, optional include partion and repliction values
+#   e.g. <topic>:<partions>:<replicationFactor> -> test:3:2 (defaults to <topics>:3:1)
+KAFKA_TOPICS=2xx,reprocess,3xx,metrics:3:3
+KAFKA_HOSTS=kafka-01:9092,kafka-02:9092,kafka-03:9092
+
+# MPI MEDIATOR
+MPI_MEDIATOR_INSTANCES=3
+
+# Message Bus Helper - Hapi Proxy
+HAPI_PROXY_INSTANCES=3
+
+# Identity Access Manager - Keycloak
+KC_FRONTEND_URL=https://keycloak.domain
+KC_GRAFANA_ROOT_URL=https://grafana.domain
+KC_JEMPI_ROOT_URL=https://jempi-web.domain
+KC_SUPERSET_ROOT_URL=https://superset.domain
+KC_OPENHIM_ROOT_URL=https://openhimconsole.domain
+GF_SERVER_DOMAIN=grafana.domain
+
+# Client Registry - JeMPI
+JEMPI_WEB_INSTANCES=3
+REACT_APP_JEMPI_BASE_URL=https://jempi-api.domain/JeMPI
+JEMPI_SESSION_SECURE=true
+JEMPI_REPMGR_PARTNER_NODES=jempi-postgresql-01,jempi-postgresql-02,jempi-postgresql-03
+JEMPI_ASYNC_RECEIVER_INSTANCES=1
+JEMPI_SYNC_RECEIVER_INSTANCES=1
+JEMPI_PRE_PROCESSOR_INSTANCES=1
+JEMPI_CONTROLLER_INSTANCES=1
+JEMPI_EM_CALCULATOR_INSTANCES=1
+JEMPI_LINKER_INSTANCES=1
+JEMPI_API_INSTANCES=3
+
+# Resource limits
+OPENHIM_MEMORY_LIMIT=4G
+ES_MEMORY_LIMIT=20G
+LOGSTASH_MEMORY_LIMIT=8G
+KAFKA_MEMORY_LIMIT=8G
+KAFDROP_MEMORY_LIMIT=500M

.env.hie

@@ -0,0 +1,70 @@
+# General
+CLUSTERED_MODE=false
+VERSION=v1.1.0-alpha.1
+# Log
+
+DEBUG=1
+BASHLOG_FILE=1
+BASHLOG_FILE_PATH=platform.log
+
+# Interoperability Layer - OpenHIM
+OPENHIM_CORE_INSTANCES=1
+OPENHIM_CONSOLE_INSTANCES=1
+OPENHIM_MEDIATOR_API_PORT=443
+MONGO_SET_COUNT=1
+OPENHIM_MONGO_URL=mongodb://mongo-1:27017/openhim
+OPENHIM_MONGO_ATNAURL=mongodb://mongo-1:27017/openhim
+
+# FHIR Datastore - HAPI FHIR
+HAPI_FHIR_INSTANCES=1
+REPMGR_PARTNER_NODES=postgres-1
+POSTGRES_REPLICA_SET=postgres-1:5432
+
+# Reverse Proxy - Nginx
+REVERSE_PROXY_INSTANCES=1
+STAGING=false
+INSECURE=true
+
+# Analytics Datastore - Elastic Search
+# ES_HEAP_SIZE=-Xms8192m -Xmx8192m
+# ES_LEADER_NODE=analytics-datastore-elastic-search-01
+# ES_HOSTS=analytics-datastore-elastic-search-01:9200
+
+# Analytics Datastore - Clickhouse
+CLICKHOUSE_HOST=analytics-datastore-clickhouse-01
+
+# Dashboard Visualiser - Kibana
+KIBANA_INSTANCES=1
+
+# Data Mapper - Logstash
+#LS_JAVA_OPTS=-Xmx6144m -Xms6144m
+LOGSTASH_INSTANCES=3
+LOGSTASH_DEV_MOUNT=false
+LOGSTASH_PACKAGE_PATH=
+
+# Dashboard Visualiser - JS Reports
+JS_REPORT_INSTANCES=1
+JS_REPORT_LICENSE_KEY=
+
+# MAKE SURE YOU HAVE RUN 'set-permissions.sh' SCRIPT BEFORE AND AFTER RUNNING JS REPORT
+JS_REPORT_DEV_MOUNT=false
+JS_REPORT_PACKAGE_PATH=
+
+# Message Bus Kafka
+# Topics should comma seperated, optional include partion and repliction values
+#   e.g. <topic>:<partions>:<replicationFactor> -> test:3:2 (defaults to <topics>:3:1)
+KAFKA_TOPICS=2xx,reprocess,3xx,metrics:3:3,map-concepts,map-locations,send-adt-to-ipms,send-orm-to-ipms,save-pims-patient,save-ipms-patient,handle-oru-from-ipms
+KAFKA_HOSTS=kafka-01:9092 #,kafka-02:9092,kafka-03:9092
+
+# MPI MEDIATOR
+MPI_MEDIATOR_INSTANCES=3
+
+# Message Bus Helper - Hapi Proxy
+HAPI_PROXY_INSTANCES=3
+
+# Resource limits
+OPENHIM_MEMORY_LIMIT=4G
+ES_MEMORY_LIMIT=20G
+LOGSTASH_MEMORY_LIMIT=8G
+KAFKA_MEMORY_LIMIT=8G
+KAFDROP_MEMORY_LIMIT=500M

.env.local

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+# General
+
+CLUSTERED_MODE=false
+
+# Log
+
+DEBUG=0
+BASHLOG_FILE=0
+BASHLOG_FILE_PATH=platform.log
+
+# Data Mapper - Logstash
+
+LOGSTASH_DEV_MOUNT=false
+LOGSTASH_PACKAGE_PATH=
+
+# Dashboard Visualiser - JS Report
+
+## !NOTE: MAKE SURE YOU HAVE RUN 'set-permissions.sh' SCRIPT BEFORE AND AFTER RUNNING JS REPORT
+JS_REPORT_DEV_MOUNT=false
+JS_REPORT_PACKAGE_PATH=
+
+# Message Bus - Kafka
+
+#  !NOTE: Topics should comma seperated, optional include partion and repliction values
+#   e.g. <topic>:<partions>:<replicationFactor> -> test:3:2 (defaults to <topics>:3:1)
+# KAFKA_TOPICS=2xx,reprocess,3xx,metrics:3:1

.env.old

@@ -0,0 +1,19 @@
+
+# Global
+TZ=America/Los_Angeles
+RESTART=unless-stopped
+COMPOSE_PROJECT_NAME="hie-botswana"
+ROOT_URL=bwhie.org
+
+# Traefik
+VERSION=latest
+LOG=INFO
+
+# ACME DNS-01 challenge
+PROVIDER=route53
+RESOLVER=1.1.1.1:53,8.8.8.8:53
+[email protected]
+
+SHR_VERSION=latest
+FHIR_CONVERTER_VERSION=latest
+OMANG_SVC_VERSION=latest

.env.remote

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+# Test environment vars for remote deployment - change the values below to point to your deployed instances
+
+CLUSTERED_MODE=true
+
+OPENHIM_CORE_SERVICE_NAME=<openhim_hostname>
+OPENHIM_TRANSACTION_API_PORT=<port>
+OPENHIM_MEDIATOR_API_PORT=<OPENHIM_MEDIATOR_API_PORT>
+MOCK_SERVER_HOST=<mock_service_hostname>
+MOCK_SERVER_PORT=<port>
+POSTGRES_REPLICA_SET=postgres-1:5432,postgres-2:5432,postgres-3:5432
+
+# Analytics Datastore - Elastic Search
+ES_HOSTS="\"analytics-datastore-elastic-search-01:9200","analytics-datastore-elastic-search-02:9200","analytics-datastore-elastic-search-03:9200\""
+
+# Analytics Datastore - Clickhouse
+CLICKHOUSE_HOST=analytics-datastore-clickhouse-01
+
+# FHIR Datastore - HAPI FHIR
+REPMGR_PARTNER_NODES=postgres-1,postgres-2,postgres-3
+POSTGRES_REPLICA_SET=postgres-1:5432,postgres-2:5432,postgres-3:5432
+
+# Interoperability Layer - OpenHIM
+MONGO_SET_COUNT=3
+OPENHIM_MONGO_URL=mongodb://mongo-1:27017,mongo-2:27017,mongo-3:27017/openhim?replicaSet=mongo-set
+OPENHIM_MONGO_ATNAURL=mongodb://mongo-1:27017,mongo-2:27017,mongo-3:27017/openhim?replicaSet=mongo-set
+
+# Message Bus - Kafka
+# Topics should comma seperated, optional include partion and repliction values
+#   e.g. <topic>:<partions>:<replicationFactor> -> test:3:2 (defaults to <topics>:3:1)
+KAFKA_TOPICS=2xx,reprocess,3xx,metrics:3:1
+