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remove sample T1w image that is actually T2w #7

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merged 3 commits into from
Jul 25, 2024
Merged

remove sample T1w image that is actually T2w #7

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c058526
remove sample T1w image that is actually T2w
tclose Jun 26, 2024
62b8599
Merge branch 'main' into remove-mistaken-t1w
tclose Jun 26, 2024
b5b8118
fixed up reference image dims in new default T1w
tclose Jun 26, 2024
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12 changes: 6 additions & 6 deletions medimages4tests/mri/neuro/t1w.py
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Original file line number Diff line number Diff line change
Expand Up @@ -7,11 +7,11 @@


SAMPLES = {
"ds004130-ON01016": OpenneuroSpec(
dataset="ds004130",
tag="1.0.0",
path="sub-ON01016/anat/sub-ON01016_acq-fspgr_run-01_T1w",
),
# "ds004130-ON01016": OpenneuroSpec(
# dataset="ds004130",
# tag="1.0.0",
# path="sub-ON01016/anat/sub-ON01016_acq-fspgr_run-01_T1w",
# ),
"ds002014-01": OpenneuroSpec(
dataset="ds002014",
tag="1.0.1",
Expand All @@ -30,7 +30,7 @@
}


def get_image(out_dir: Path = None, sample: str = "ds004130-ON01016"):
def get_image(out_dir: Path = None, sample: str = "ds002014-01"):
if out_dir is None:
out_dir = cache_dir / sample
return retrieve_from_openneuro(SAMPLES[sample], out_dir)
2 changes: 1 addition & 1 deletion tests/test_openneuro.py
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Original file line number Diff line number Diff line change
Expand Up @@ -8,4 +8,4 @@ def test_openneuro_retrieve():

nifti = nb.load(nifti_fpath)

assert nifti.shape == (204, 256, 256)
assert nifti.shape == (320, 194, 320)
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