Update website colours, fix vignette rendering

_pkgdown.yml

@@ -3,6 +3,8 @@ template:
   bootstrap: 5
   params:
     bootswatch: cerulean
+  development:
+    mode: release
 navbar:
   structure:
     left:

pkgdown/extra.css

@@ -4,11 +4,11 @@
 h1, h2, h3, h4, .h1, .h2, .h3, .main-title, .main-subtitle {
   font-family: Lato;
   font-weight: normal;
-  color: #134348;
+  color: #076064;
 }
 
 a {
-    color: #82c8d0;
+    color: #47a3a9;
     text-decoration: none;
 }
 
@@ -27,7 +27,7 @@ body { font-family: Roboto; }
 }
 
 .navbar.bg-primary {
-  background-image: linear-gradient(to bottom, #ffffff, #d7eaf7) !important;
+  background-image: linear-gradient(to bottom, #ffffff, #ffffff) !important;
   /*background-image: linear-gradient(#93d6d6, #78CCCC 60%, #6cb7b7);*/
 }
 
@@ -52,7 +52,8 @@ body { font-family: Roboto; }
 }
 
 .navbar-nav .nav-link:focus {
-    color: #134348;
+    color: #d7eaf7;
+    background-color: #076064!important;
 }
 
 .navbar-nav .active>.nav-link {

vignettes/checking-your-dataset.Rmd

@@ -56,7 +56,7 @@ corella contains internal `check_` functions for all individual Darwin Core term
 # generate table
 # fn_to_term_table() |>
 #   dplyr::bind_rows() |>
-#   write.csv("inst/supported-terms.csv")
+#   write.csv("vignettes/supported-terms.csv")
 ```
 
 
@@ -67,7 +67,7 @@ corella contains internal `check_` functions for all individual Darwin Core term
 library(gt)
 library(dplyr)
 
-readr::read_csv(system.file("supported-terms.csv",
+readr::read_csv(system.file("./supported-terms.csv",
                             package = "corella")) |>
   select(-1) |> # remove reference column
   mutate(
@@ -105,6 +105,7 @@ readr::read_csv(system.file("supported-terms.csv",
     container.height = "450px"
   )
 ```
+
 <br> 
 
 When a user specifies a column to a matching Darwin Core term (or the column/term is detected by corella automatically) in a `use_` function, the `use_` function triggers that matching term's `check_` function. This process ensures that the data is correctly formatted prior to being saved in a Darwin Core Archive. 

vignettes/supported-terms.csv

@@ -0,0 +1,46 @@
+"","use_function","dwc_term"
+"1","use_occurrences()","basisOfRecord"
+"2","use_occurrences()","occurrenceID"
+"3","use_scientific_name()","scientificName"
+"4","use_coordinates()","decimalLatitude"
+"5","use_coordinates()","decimalLongitude"
+"6","use_coordinates()","geodeticDatum"
+"7","use_coordinates()","coordinateUncertaintyInMeters"
+"8","use_datetime()","eventDate"
+"9","use_locality()","continent"
+"10","use_locality()","country"
+"11","use_locality()","countryCode"
+"12","use_locality()","stateProvince"
+"13","use_locality()","locality"
+"14","use_taxonomy()","kingdom"
+"15","use_taxonomy()","phylum"
+"16","use_taxonomy()","class"
+"17","use_taxonomy()","order"
+"18","use_taxonomy()","family"
+"19","use_taxonomy()","genus"
+"20","use_taxonomy()","specificEpithet"
+"21","use_taxonomy()","vernacularName"
+"22","use_abundance()","individualCount"
+"23","use_abundance()","organismQuantity"
+"24","use_abundance()","organismQuantityType"
+"25","use_abundance()","organismQuantity"
+"26","use_collection()","datasetID"
+"27","use_collection()","datasetName"
+"28","use_collection()","catalogNumber"
+"29","use_coordinates()","coordinatePrecision"
+"30","use_scientific_name()","taxonRank"
+"31","use_scientific_name()","scientificNameAuthorship"
+"32","use_datetime()","year"
+"33","use_datetime()","month"
+"34","use_datetime()","day"
+"35","use_datetime()","eventTime"
+"36","use_individual_traits()","individualID"
+"37","use_individual_traits()","lifeStage"
+"38","use_individual_traits()","sex"
+"39","use_individual_traits()","vitality"
+"40","use_individual_traits()","reproductiveCondition"
+"41","use_observer()","recordedBy"
+"42","use_observer()","recordedByID"
+"43","use_events()","eventID"
+"44","use_events()","eventType"
+"45","use_events()","parentEventID"