Nesp

scripts/RestClient/nesp/TSR/TSR_sites.csv

@@ -0,0 +1,2 @@
+projectName,projectId,siteId,name
+nesp,dde82d78-d201-4296-8624-c9fce565395e,78e5cbc6-fcf1-482f-a234-a68e23414515,TSR_7_1

scripts/RestClient/nesp/TSR/siteImport.js

@@ -0,0 +1,53 @@
+print("Import started");
+
+var projectName = 0;
+var projectId = projectName + 1;
+var siteId = projectId + 1;
+var name = siteId + 1;
+
+var csvData = cat('TSR_sites.csv');
+print("Loaded csv file");
+var csvRows = csvData.split('\r');
+print("Total rows "+ csvRows.length);
+
+for(var i = 1; i < csvRows.length; i++) {
+ print("--------START record---------")
+
+ var row = csvRows[i];
+ var fields = row.split(',');
+
+ var project_id = fields[projectId];
+ var site_id = fields[siteId];
+ var site_name = fields[name];
+
+ print("Updating projectSiteId " + site_id + " of projectId - " + project_id)
+
+ var projectResult = db.project.update(
+ { projectId: project_id },
+ { $set: { projectSiteId: site_id } }
+ );
+
+ var projects = [project_id];
+
+ print("Updating projects " + projects + " of site id - " + site_id)
+
+ var today = new ISODate();
+ var dd = today.getDate();
+ var mm = today.getMonth() + 1; //January is 0!
+ var yyyy = today.getFullYear();
+ var dateUTC = yyyy+"-"+("0" + mm).slice(-2)+"-"+("0" + dd).slice(-2)+"T00:00:00Z";
+
+ var siteResult = db.site.update(
+ { siteId: site_id },
+ { $set: { projects: projects, lastUpdated: ISODate(dateUTC) } }
+ );
+
+ print("projectResult: "+projectResult)
+ print("siteResult: "+siteResult)
+
+ print("--------END record---------")
+}
+
+print(">>>>>>>>>>>>>>>>>>>>")
+print("Updated " + (i-1) + " records");
+print("<<<<<<<<<<<<<<<<<<<")

scripts/RestClient/nesp/addUserPermissionToNesp.js

@@ -0,0 +1,36 @@
+//Add hub permission
+
+var userPermission = {};
+userPermission.accessLevel = 'admin';
+userPermission.entityId = "a0c69ce5-a2fc-4dfe-a387-468a4c916685"; //hubId
+userPermission.userId = '135151';
+userPermission.entityType = 'au.org.ala.ecodata.Hub';
+userPermission.status = "active";
+
+var hubUserPermissionResult = db.userPermission.insert(userPermission);
+print("hubUserPermissionResult " + hubUserPermissionResult)
+
+//Add project permissions
+
+var programs = db.hub.findOne({hubId:"a0c69ce5-a2fc-4dfe-a387-468a4c916685"}).supportedPrograms;
+
+for (i =0;i<programs.length;i++) {
+ let program = programs[i];
+
+ var projects = db.project.find({associatedProgram: program, status:"active"},{projectId:1, _id:0});
+
+ while (projects.hasNext()) {
+ let project = projects.next();
+ print(project.projectId)
+
+ var userPermission = {};
+ userPermission.accessLevel = 'admin';
+ userPermission.entityId = project.projectId;
+ userPermission.userId = '135151';
+ userPermission.entityType = 'au.org.ala.ecodata.Project';
+ userPermission.status = "active";
+
+ var projectUserPermissionResult = db.userPermission.insert(userPermission);
+ print("projectUserPermissionResult " + projectUserPermissionResult)
+ }
+}

scripts/RestClient/nesp/marine/Marine_Biodiversity_Hub_Projects_tab.txt

@@ -0,0 +1,2 @@
+hub_name associatedProgram associatedSubProgram projectSiteId projectType organisationId organisationUrl organisationLogo projectName aim description plannedStartDate plannedEndDate ecoScienceType isExternal status manager countries uNRegions banner_image projectUrl associatedOrgs contactMail keywords termsOfUseAgreement embeddedVideo embeddedVideoTitle
+nesp-marine NESP 1 - Marine Biodiversity Hub Theme A - Threatened and migratory species Ecological or biological survey / assessment (not citizen science) 9fe1c64f-ad8c-487d-b7f7-b975563d5e4b Project A1 - Northern Australian hotspots for the recovery of threatened euryhaline species Australia's northern rivers and estuaries are important to sustaining sawfish and river shark species listed under the EPBC Act. This project will provide the Department of the Environment with information to improve management and facilitate the recovery of these species. Australia's northern rivers and estuaries are important to sustaining sawfish and river shark species listed under Australia's<em> Environment Protection and Biodiversity Conservation Act 1999</em> (EPBC Act). This project will provide the Department of the Environment with information to improve management and facilitate the recovery of these species.<p>Acoustic telemetry, molecular research, life history studies and Indigenous engagement and education will be central to determining the status of threatened river sharks, and establishing monitoring, management and protection. Following are the key research activities.</p><strong>Monitoring and understanding<strong><p>More than 200 tagged animals will be monitored (via an acoustic array established in earlier research) for mortality estimates, movement patterns and habitat use, acoustic receiver arrays will be designed to measure long term movement and mortality in NT, QLD and WA rivers, and statistical methods developed for estimating annual juvenile mortality.</p><p>Thirty neonate <em>Glyphis glyphis</em> (Speartooth Sharks) will be tagged for mortality estimates and large sub-adult <em>G. glyphis</em> will be tagged to investigate adult distribution, reproductive philopatry and mortality (Adelaide River) and the age structure of <em>G. glyphis</em> will be determined for demographic models.</p><p><em>G. garricki</em> (Northern River Shark) tissue samples will be collected in unsurveyed NT habitat (including the Daly, Finniss, Fitzmaurice, Victoria, Keep rivers) and in WA (Cambridge Gulf, King Sound) in partnership with Indigenous Ranger Groups, Murdoch University and NT Fisheries. <em>G. garricki</em> population structure will be examined and close-kin mark recapture used to establish a lower bound population size estimate.</p><p>Marine Biodiversity Hub research on habitat use, long-term movements and biologically important areas will be synthesised and recovery-directed research prioritised, and&nbsp;new information will be&nbsp;provided&nbsp;for updating the&nbsp;EPBC status of river sharks.</p><strong>Indigenous partnerships for management<strong><p>Key components of this project are being undertaken in partnership with Indigenous organisations, communities and ranger groups. Partnerships will assess Indigenous cultural use and knowledge of sawfish, and develop a sawfish education package for communities.</p><p>The Northern Australian Indigenous Land and Sea Management Alliance is a project partner and Indigenous land councils will be consulted to evaluate engagement and partnership opportunities.</p><p>Malak Malak Rangers (NT) and Dambi-Mangari Rangers (WA) among other ranger groups are assisting with field research, and protocols and methodologies are being developed for an annual Malak Malak <em>Pristis pristis</em> (Largetooth Sawfish) survey.</p><p><strong>Related information</strong></p><ul><li><a href=https://www.nespmarine.edu.au/news/sampling-speartooth-sharks-remote-lower-ord-river">Sampling Speartooth Sharks on the remote Lower Ord River</a></li><li><a href="https://www.nespmarine.edu.au/news/fishers-offer-narrow-sawfish-helping-hand">Fishers offer Narrow Sawfish a helping hand</a></li><li><a href="https://www.nespmarine.edu.au/news/largetooth-sawfish-found-rock-art-500-kilometres-sea">Largetooth Sawfish found in rock art 500 kilometres from the sea</a></li><li><a href="https://www.nespmarine.edu.au/news/making-art-videos-signs-and-steps-save-sawfish-australias-northern-rivers">Making art, videos, signs and steps to save sawfish in Australia's northern rivers</a></li><li>S<a href="http://www.nespmarine.edu.au/sawfish">awfish and river shark research</a> undertaken during the National Environmental Research Program&nbsp; (NERP) 2011-2014&nbsp;</li></ul> 7/1/16 30/6/21 TRUE Completed Peter Kyne Australia Oceania https://www.nespmarine.edu.au/sites/default/files/sawfish_rock_art_Peter_Kyne_carousel_0.png https://www.nespmarine.edu.au/project/project-a1-northern-australian-hotspots-recovery-threatened-euryhaline-species [email protected] Euryhaline sharks,Glyphis garricki,Glyphis glyphis,Indigenous engagement,Largetooth Sawfish,Malak Malak Rangers,northern river sharks,Pristis pristis,Speartooth Shark TRUE

scripts/RestClient/nesp/marine/document.js

@@ -0,0 +1,129 @@
+var document =
+ {
+ "labels" : [ ],
+ "dateCreated" : "",
+ "lastUpdated" : "",
+ "isPrimaryProjectImage" : true,
+ "documentId" : "",
+ "filepath" : "2021-12",
+ "thirdPartyConsentDeclarationMade" : false,
+ "projectActivityId" : "",
+ "role" : "mainImage",
+ "name" : "",
+ "type" : "image",
+ "status" : "active",
+ "filename" : "",
+ "isSciStarter" : false,
+ "projectId" : "",
+ "readOnly" : false,
+ "filesize" : 104117,
+ "contentType" : "image/jpeg"
+}
+
+/*
+var document =
+{
+ "documentId" : "",
+ "filename" : "",
+ "filepath" : "2021-02",
+ "isPrimaryProjectImage" : true,
+ "isSciStarter" : false,
+ "labels" : [ ],
+ "name" : "",
+ "projectId" : "",
+ "role" : "mainImage",
+ "status" : "active",
+ "thirdPartyConsentDeclarationMade" : false,
+ "type" : "image",
+ "lng" : "",
+ "filesize" : 104117,
+ "public" : true,
+ "contentType" : "image/jpeg",
+ "lat" : "",
+ "projectActivityId" : "",
+ "roles" : [
+ {
+ "name" : "Information",
+ "id" : "information"
+ },
+ {
+ "name" : "Embedded Video",
+ "id" : "embeddedVideo"
+ },
+ {
+ "name" : "Exceedance Report",
+ "id" : "exceedanceReport"
+ },
+ {
+ "name" : "Photo",
+ "id" : "photo"
+ },
+ {
+ "name" : "Project Plan / Work plan",
+ "id" : "projectPlan"
+ },
+ {
+ "name" : "Project Variation",
+ "id" : "projectVariation"
+ },
+ {
+ "name" : "Project Highlight Report",
+ "id" : "projectHighlightReport"
+ },
+ {
+ "name" : "Other Project document",
+ "id" : "other"
+ }
+ ],
+ "fileReady" : true,
+ "thirdPartyConsentDeclarationRequired" : true,
+ "embeddedVideoVisible" : false,
+ "settings" : {
+ "thirdPartyDeclarationTextSelector" : "#thirdPartyDeclarationText",
+ "roles" : [
+ {
+ "name" : "Information",
+ "id" : "information"
+ },
+ {
+ "name" : "Embedded Video",
+ "id" : "embeddedVideo"
+ },
+ {
+ "name" : "Exceedance Report",
+ "id" : "exceedanceReport"
+ },
+ {
+ "name" : "Photo",
+ "id" : "photo"
+ },
+ {
+ "name" : "Project Plan / Work plan",
+ "id" : "projectPlan"
+ },
+ {
+ "name" : "Project Variation",
+ "id" : "projectVariation"
+ },
+ {
+ "name" : "Project Highlight Report",
+ "id" : "projectHighlightReport"
+ },
+ {
+ "name" : "Other Project document",
+ "id" : "other"
+ }
+ ],
+ "showSettings" : true,
+ "imageLocation" : "/assets/"
+ },
+ "hasPreview" : false,
+ "fileButtonText" : "Change file",
+ "readOnly" : false,
+ "saveHelp" : "You must accept the Privacy Declaration before an image can be made viewable by everyone",
+ "fileLabel" : "",
+ "progress" : 0,
+ "complete" : false,
+ "saveEnabled" : false
+};
+*/