Removed store_true from peptide_tools_master keys.

AstraZeneca · Feb 4, 2022 · d969dda · d969dda
1 parent ab914dc
commit d969dda
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Showing 2 changed files with 10 additions and 2 deletions.
diff --git a/.gitignore b/.gitignore
@@ -1,2 +1,3 @@
 */__pycache__
 *.png
+*.swp
diff --git a/peptide_tools_master/peptide_tools_master.py b/peptide_tools_master/peptide_tools_master.py
@@ -51,8 +51,8 @@ def arg_parser():
     ### rdkit_pI.py keys
     #parser.add_argument("--print_fragment_pkas", dest="l_print_fragment_pkas", help="Print out fragments with corresponding pKas used in pI calcution", default='')
     #parser.add_argument("--print_pka_set", dest="l_print_pka_set", help="Print out stored pka sets explicitly.", default='')
-    parser.add_argument("--print_fragment_pkas",default=False, action='store_true',dest="l_print_fragment_pkas", help="Print out fragments with corresponding pKas used in pI calcution")
-    parser.add_argument("--print_pka_set",default=False, action='store_true',dest="l_print_pka_set", help="Print out stored pka sets explicitly.")
+    parser.add_argument("--print_fragment_pkas",default="no", action='store',dest="l_print_fragment_pkas", help="Print out fragments with corresponding pKas used in pI calcution")
+    parser.add_argument("--print_pka_set",default="no", action='store',dest="l_print_pka_set", help="Print out stored pka sets explicitly.")
 
     ### pI_fasta.py keys
     parser.add_argument("--ionized_Cterm", dest="ionized_Cterm", help="is C-terminus ionized [COO-]?", default=True)
@@ -63,6 +63,13 @@ def arg_parser():
 
     args = parser.parse_args()
 
+    if args.l_print_pka_set == "yes": args.l_print_pka_set = True
+    else: args.l_print_pka_set = False
+
+    if args.l_print_fragment_pkas == "yes": args.l_print_fragment_pkas = True
+    else: args.l_print_fragment_pkas = False
+
+
     return args