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14 Open 6 Closed
14 Open 6 Closed
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Issues list

Do you have to use different phenotype data in step3 of ldpred to logistic regression?
#20 opened Oct 9, 2019 by jackosullivanoxford
1
Determining time of follow-up visit in UKBB data
#19 opened Oct 1, 2019 by jackosullivanoxford
2
Results of sensitivity analysis when including TIA as event outcome
#18 opened Sep 19, 2019 by jackosullivanoxford
2
Phenotype data from UKBB
#16 opened Jun 18, 2019 by jackosullivanoxford
3
Validation data
#15 opened Jun 18, 2019 by jackosullivanoxford
2
Compare the effect allele of GWAS SS and UKBB AFib Plink files
#14 opened Jun 17, 2019 by jackosullivanoxford
Make detailed methods/protocol
#11 opened May 20, 2019 by jackosullivanoxford
If the PRS deciles still put the highest prevalence of ischemic stroke in the lowest decile group - check the following
#9 opened Apr 30, 2019 by jackosullivanoxford
14
Test PRS on non-AFib patients with phenotype of ischemic stroke or no ischemic stroke
#8 opened Apr 16, 2019 by jackosullivanoxford
Important covariates to include in logistic regression
#7 opened Apr 15, 2019 by jackosullivanoxford
3
Make definitive files of a) total number of patients that have Afib in UKBB b) European patients with AFib in UKBB c) European patients with AFib with first degree relatives removed
#6 opened Apr 15, 2019 by jackosullivanoxford
1
Steps to create kinship coefficient file and, ultimately, remove first degree relatives
#5 opened Apr 8, 2019 by jackosullivanoxford
1
Quality control of Base and Target Data
#4 opened Apr 2, 2019 by jackosullivanoxford
11
Check that GWAS summary statistics are mean centered and standardized to 1 (LDpred assumes this)
#2 opened Apr 2, 2019 by jackosullivanoxford
1
ProTip! Updated in the last three days: updated:>2024-11-02.