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GenNet version 2.0 with the interpretation module
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ArnovanHilten committed Feb 27, 2024
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Expand Up @@ -23,7 +23,10 @@ The Gennet framework is based on tensorflow, click [here](GenNet_utils/LocallyDi

## 2. Getting started

Follow the instructions below to get started and check the [A to Z tutorial](https://colab.research.google.com/github/ArnovanHilten/GenNet/blob/master/examples/A_to_Z/GenNet_A_to_Z.ipynb) to start GenNet with your own data!
Follow the instructions below to get started.

> [!TIP]
> Check the [A to Z Colab tutorial](https://colab.research.google.com/github/ArnovanHilten/GenNet/blob/master/examples/A_to_Z/GenNet_A_to_Z.ipynb) for an overview on how to use GenNet with your own data!
### Prerequisites:

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### Interpreting GenNet
### GenNet Interpretation module

GenNet offers a number of intepretation methods, to find important features and interacting features.

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- DFIM: perturbs each input (or N inputs in the order of importance), and tracks which other features change importance to find interacting features
- PathExplain: Uses the Expected Hessian to find interacting features

For more information use: python GenNet.py interpret --help
For more information use: `python GenNet.py interpret --help`


### Jupyter notebook
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