Updating Phenotype DB with updated SQL tables#484

Merged

r-vieira merged 53 commits intodevelopmentfrom fix/phenotype-db

May 31, 2024

+56-11

Commits on Apr 24, 2024

Add launch config for POPULATE_PHENOTYPES_DATABASE

vlagrassa
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Orzu Tursunova
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Add trait display names to Google Sheet > GCP db op

vlagrassa
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Orzu Tursunova
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Add trait display names to datastore entity class

vlagrassa
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Orzu Tursunova
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Better fallback behavior for display name

vlagrassa
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Orzu Tursunova
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Display tags column as flex-row

vlagrassa
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Orzu Tursunova
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Render empty table cell if no short description

vlagrassa
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Orzu Tursunova
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Remove unused "label" field from trait report & link with "View Report" col

vlagrassa
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Orzu Tursunova
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Move trait multiline HTML to new utils file

vlagrassa
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Orzu Tursunova
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Render trait display name in reports page w new macro

vlagrassa
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Orzu Tursunova
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Move trait JSON query to util function

vlagrassa
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Orzu Tursunova
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When selecting trait, query info from database directly

vlagrassa
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Orzu Tursunova
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Render trait display name in trait selectors

vlagrassa
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Orzu Tursunova
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Remove repeat listings for display name fields

vlagrassa
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Orzu Tursunova
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Reorganize TraitFile props a bit

vlagrassa
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Orzu Tursunova
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Render trait display names in graph axes

vlagrassa
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Orzu Tursunova
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Move report list individual tool cols to Jinja

vlagrassa
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Orzu Tursunova
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Cache trait display names in report objects

vlagrassa
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Orzu Tursunova
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Render trait display names in reports list w custom renderer

vlagrassa
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Orzu Tursunova
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Fix initial trait none check (again)

vlagrassa
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Orzu Tursunova
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Sort out PhenotypeReport trait name fields (see desc)

vlagrassa
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Orzu Tursunova
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Render report axis labels with styling (bold, italics, etc)

vlagrassa
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Orzu Tursunova
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Add DbOp for recomputing cached phenotype report display names

vlagrassa
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Orzu Tursunova
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Set full CaeNDR trait name as display name for Zhang traits

vlagrassa
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Orzu Tursunova
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Use trait display names in offcanvas header

vlagrassa
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Orzu Tursunova
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Fix: render axis labels as HTML in single-trait report

vlagrassa
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Orzu Tursunova
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Fix: move display name computation to Trait & use to initialize Zhang trait in selector properly

vlagrassa
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Orzu Tursunova
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Set expiration policy for subscription to never

vlagrassa
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Orzu Tursunova
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Move strain labels to first element of result tuples

vlagrassa
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Orzu Tursunova
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Add TSV download route for phenotype report

vlagrassa
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Orzu Tursunova
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Add code to download SVGs

vlagrassa
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Orzu Tursunova
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Show download buttons

vlagrassa
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Orzu Tursunova
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Connect SVG download buttons to download function

vlagrassa
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Orzu Tursunova
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Fix indentation

vlagrassa
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Orzu Tursunova
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Add download as PDF button

vlagrassa
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Orzu Tursunova
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Changed PDF icon and changed copy

natalieroman
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Orzu Tursunova
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Removed custom no-print css classes and replaced with Bootstrap no print classes

natalieroman
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Orzu Tursunova
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Fixed height of chart container to show ranked barplot "download svg" button

natalieroman
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Orzu Tursunova
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Check Google Sheet columns before parsing rows

vlagrassa
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Orzu Tursunova
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Fix: trait lookup request data

vlagrassa
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Orzu Tursunova
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Flash error message if trait metadata request fails

vlagrassa
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Orzu Tursunova
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Commits on May 9, 2024

Merge remote-tracking branch 'refs/remotes/origin/development' into development
Orzu Tursunova
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Merge remote-tracking branch 'origin/development' into development
Orzu Tursunova
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Fixing the POST request for trait details, adding off-canvas header ID
Orzu Tursunova
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Changing trait_name -> trait_id when fetching trait details
Orzu Tursunova
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Updating Phenotype metadata parsing function - setting dataset correctly
Orzu Tursunova
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Commits on May 10, 2024

Passing trait_id for zhang traits in analyze link()
Orzu Tursunova
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Updating display name for zhang files
Orzu Tursunova
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Commits on May 13, 2024

Update module version of db_operations
Orzu Tursunova
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Adding bleach module to db_operations
Orzu Tursunova
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Commits on May 20, 2024

Updating analayze_link - changing trait_name to trait_id
Orzu Tursunova
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Update module version
Orzu Tursunova
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Update the way of fetching the trait
Orzu Tursunova
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Commits on May 31, 2024

Merge branch 'development' into fix/phenotype-db
vlagrassa
committed