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@AnantharamanLab

Anantharaman Microbiome Lab at UW-Madison

Software and Databases developed by the Anantharaman Lab

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  1. vRhyme vRhyme Public

    Binning Virus Genomes from Metagenomes

    Python 58 10

  2. METABOLIC METABOLIC Public

    A scalable high-throughput metabolic and biogeochemical functional trait profiler

    Perl 183 45

  3. VIBRANT VIBRANT Public

    Virus Identification By iteRative ANnoTation

    Python 154 38

  4. PropagAtE PropagAtE Public

    Prophage Activity Estimator

    Python 26 3

  5. vClassifier vClassifier Public

    Species-level taxonomic classification of viruses

    Shell 2

  6. ViWrap ViWrap Public

    A wrapper to identify, bin, classify, and predict host-viral relationship for viruses

    Python 67 15

Repositories

Showing 10 of 22 repositories
  • Clostridium_scindens_mining Public
    AnantharamanLab/Clostridium_scindens_mining’s past year of commit activity
    Shell 0 GPL-3.0 1 0 0 Updated Dec 11, 2024
  • protein_set_transformer Public Forked from cody-mar10/protein_set_transformer

    Protein Set Transformer (PST) framework for training protein-language-model-based genome language models. Inference is possible for viral genomes using our pretrained viral foundation model.

    AnantharamanLab/protein_set_transformer’s past year of commit activity
    Jupyter Notebook 5 MIT 3 1 0 Updated Dec 9, 2024
  • vClassifier Public

    Species-level taxonomic classification of viruses

    AnantharamanLab/vClassifier’s past year of commit activity
    Shell 2 GPL-3.0 0 2 0 Updated Dec 6, 2024
  • Prophage-DB Public Forked from etandieppa/Prophage-DB

    Prophage-DB scripts for generating figures

    AnantharamanLab/Prophage-DB’s past year of commit activity
    Jupyter Notebook 2 1 0 0 Updated Nov 15, 2024
  • ViWrap Public

    A wrapper to identify, bin, classify, and predict host-viral relationship for viruses

    AnantharamanLab/ViWrap’s past year of commit activity
    Python 67 15 28 1 Updated Oct 25, 2024
  • ViromeVsMetagenome Public
    AnantharamanLab/ViromeVsMetagenome’s past year of commit activity
    1 1 0 0 Updated Oct 7, 2024
  • V-Score-Search Public Forked from PeterBadciong/V-Score-Search

    Searchable Database for V-Scores from VOG, PHROG, KEGG, eggNOG, and Pfam

    AnantharamanLab/V-Score-Search’s past year of commit activity
    JavaScript 0 1 0 0 Updated Sep 3, 2024
  • SulfurReviewPaper Public

    The procedures for Sulfur Review Paper

    AnantharamanLab/SulfurReviewPaper’s past year of commit activity
    Perl 0 0 0 0 Updated Jun 10, 2024
  • .github Public
    AnantharamanLab/.github’s past year of commit activity
    0 0 0 0 Updated May 31, 2024
  • PropagAtE Public

    Prophage Activity Estimator

    AnantharamanLab/PropagAtE’s past year of commit activity
    Python 26 GPL-3.0 3 13 0 Updated May 30, 2024
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