GitHub - AmmyDK/BEACON: trying to modify the existed code advance

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trying to modify the existed code advance

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Name		Name	Last commit message	Last commit date
Latest commit History 2 Commits
BCA_GWAS_Cig_interaction_MPI.R		BCA_GWAS_Cig_interaction_MPI.R
BCA_GWAS_GERD_interaction_MPI.R		BCA_GWAS_GERD_interaction_MPI.R
BCA_GWAS_bmi_interaction_MPI.R		BCA_GWAS_bmi_interaction_MPI.R
BCA_SKAT_GERD+_MPI.R		BCA_SKAT_GERD+_MPI.R
BCA_SKAT_MPI.R		BCA_SKAT_MPI.R
BCA_SKAT_MPI1.R		BCA_SKAT_MPI1.R
BCA_iSKAT_MPI1.R		BCA_iSKAT_MPI1.R
CGTA_imputedata.sh		CGTA_imputedata.sh
EABE-GxE-Odds-Ratios-GERD.R		EABE-GxE-Odds-Ratios-GERD.R
GCTA_gene.R		GCTA_gene.R
GTEx_eQTL.R		GTEx_eQTL.R
GWAS.sh		GWAS.sh
GWAS_imputed.sh		GWAS_imputed.sh
GWAS_imputed_BCA_hrc.sh		GWAS_imputed_BCA_hrc.sh
Meta_Analysis.R		Meta_Analysis.R
Meta_Analysis.sh		Meta_Analysis.sh
NewGenesValidate.R		NewGenesValidate.R
NewGenesValidate1.R		NewGenesValidate1.R
NewGenesValidate2.R		NewGenesValidate2.R
NewGenesValidate3.R		NewGenesValidate3.R
NewGenesValidate4.R		NewGenesValidate4.R
NewGenesValidate5.R		NewGenesValidate5.R
NewGenesValidate6_copyfrom5_notused.R		NewGenesValidate6_copyfrom5_notused.R
PRSSVM.R		PRSSVM.R
PRSSVM_gamma.R		PRSSVM_gamma.R
PRS_AUC.R		PRS_AUC.R
PRS_CNN_earlystopping_dropout.R		PRS_CNN_earlystopping_dropout.R
PRS_DNN.R		PRS_DNN.R
PRS_DNN_earlystopping.R		PRS_DNN_earlystopping.R
PRS_DNN_earlystopping_dropout.R		PRS_DNN_earlystopping_dropout.R
PRS_DNN_earlystopping_dropout_constraintW.R		PRS_DNN_earlystopping_dropout_constraintW.R
PRS_DNNexp_earlystopping_dropout.R		PRS_DNNexp_earlystopping_dropout.R
PRS_LDpred.R		PRS_LDpred.R
PRS_LDpred.sh		PRS_LDpred.sh
PRS_LDpred1.R		PRS_LDpred1.R
PRS_LDpred1.sh		PRS_LDpred1.sh
PRS_LDpred_BCA.R		PRS_LDpred_BCA.R
PRS_LDpred_BCA.sh		PRS_LDpred_BCA.sh
PRS_LDpred_cambridge.R		PRS_LDpred_cambridge.R
PRS_LDpred_cambridge.sh		PRS_LDpred_cambridge.sh
PRS_LDpred_cambridgeAmos.R		PRS_LDpred_cambridgeAmos.R
PRS_LDpred_cambridgeAmos.sh		PRS_LDpred_cambridgeAmos.sh
PRS_LDpred_cambridgeAmos1.R		PRS_LDpred_cambridgeAmos1.R
PRS_LDpred_cambridgeAmos1.sh		PRS_LDpred_cambridgeAmos1.sh
PRS_LDpred_cambridge_BEEA.R		PRS_LDpred_cambridge_BEEA.R
PRS_LDpred_cambridge_BEEA.sh		PRS_LDpred_cambridge_BEEA.sh
PRS_LDpred_eQTL.R		PRS_LDpred_eQTL.R
PRS_LDpred_eQTL.sh		PRS_LDpred_eQTL.sh
PRS_LDpred_genotyped.R		PRS_LDpred_genotyped.R
PRS_LDpred_genotyped.sh		PRS_LDpred_genotyped.sh
PRS_LDpred_genotyped1.R		PRS_LDpred_genotyped1.R
PRS_LDpred_genotyped1.sh		PRS_LDpred_genotyped1.sh
PRS_LDpred_genotyped_BCA.R		PRS_LDpred_genotyped_BCA.R
PRS_LDpred_genotyped_BCA.sh		PRS_LDpred_genotyped_BCA.sh
PRS_LDpred_genotyped_NN.R		PRS_LDpred_genotyped_NN.R
PRS_LDpred_genotyped_NN.sh		PRS_LDpred_genotyped_NN.sh
PRS_LDpred_genotyped_cambridge.R		PRS_LDpred_genotyped_cambridge.R
PRS_LDpred_genotyped_cambridge.sh		PRS_LDpred_genotyped_cambridge.sh
PRS_LDpred_genotyped_cambridgeAmos.R		PRS_LDpred_genotyped_cambridgeAmos.R
PRS_LDpred_genotyped_cambridgeAmos.sh		PRS_LDpred_genotyped_cambridgeAmos.sh
PRS_LDpred_genotyped_cambridgeAmos1.R		PRS_LDpred_genotyped_cambridgeAmos1.R
PRS_LDpred_genotyped_cambridgeAmos1.sh		PRS_LDpred_genotyped_cambridgeAmos1.sh
PRS_LDpred_genotyped_cambridge_BEEA.R		PRS_LDpred_genotyped_cambridge_BEEA.R
PRS_LDpred_genotyped_cambridge_BEEA.sh		PRS_LDpred_genotyped_cambridge_BEEA.sh
PRS_LDpred_old.R		PRS_LDpred_old.R
Read_additive_interaction.R		Read_additive_interaction.R
SKAT_gene_snps.R		SKAT_gene_snps.R
TWAS_figures.R		TWAS_figures.R
ValidateTWAS.R		ValidateTWAS.R
WGCNA.R		WGCNA.R
additive_test.R		additive_test.R
additive_test_genomewide.R		additive_test_genomewide.R
bca_extract_genotype.sh		bca_extract_genotype.sh
bca_extract_genotype1.sh		bca_extract_genotype1.sh
bca_extract_genotype2.sh		bca_extract_genotype2.sh
bca_extract_genotype2_V8.sh		bca_extract_genotype2_V8.sh
bca_extract_genotype2_V8_ambiguousSNP.sh		bca_extract_genotype2_V8_ambiguousSNP.sh
bca_extract_genotype2_V8_ambiguousSNP_addnewcontrols.sh		bca_extract_genotype2_V8_ambiguousSNP_addnewcontrols.sh
bca_extract_genotype2_V8_ambiguousSNP_addnewcontrols_hrc.sh		bca_extract_genotype2_V8_ambiguousSNP_addnewcontrols_hrc.sh
bca_extract_genotype_foragene.sh		bca_extract_genotype_foragene.sh
check_CCA.R		check_CCA.R
check_CCA1.R		check_CCA1.R
check_CCA2.R		check_CCA2.R
check_GCTA_gene.R		check_GCTA_gene.R
check_GTExV8.R		check_GTExV8.R
check_GTEx_V8_blood_eQTL_TWAS1.R		check_GTEx_V8_blood_eQTL_TWAS1.R
check_GTEx_V8_junction_eQTL_TWAS.R		check_GTEx_V8_junction_eQTL_TWAS.R
check_GTEx_V8_junction_eQTL_TWAS1.R		check_GTEx_V8_junction_eQTL_TWAS1.R
check_GTEx_V8_mucosa_eQTL_TWAS1.R		check_GTEx_V8_mucosa_eQTL_TWAS1.R
check_GTEx_V8_muscularis_eQTL_TWAS1.R		check_GTEx_V8_muscularis_eQTL_TWAS1.R
check_GTEx_junction_eQTL_TWAS.R		check_GTEx_junction_eQTL_TWAS.R
check_GTEx_mucosa_eQTL_TWAS.R		check_GTEx_mucosa_eQTL_TWAS.R
check_PCs.R		check_PCs.R
check_TCGA_eQTL_TWAS.R		check_TCGA_eQTL_TWAS.R
check_TWASres_April18.R		check_TWASres_April18.R
check_TWASres_June11.R		check_TWASres_June11.R
check_TWASres_May26.R		check_TWASres_May26.R
check_TWASres_addcontrols_June11.R		check_TWASres_addcontrols_June11.R
check_TWASres_addcontrols_June11_new.R		check_TWASres_addcontrols_June11_new.R
check_TWASres_addcontrols_hrc_June11_new.R		check_TWASres_addcontrols_hrc_June11_new.R