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@AlmaasLab

AlmaasLab

Network Systems Biology

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  1. BiGMeC BiGMeC Public

    BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor

    Jupyter Notebook 13 3

  2. AutoKEGGRec AutoKEGGRec Public

    AutoKEGGRec is an automated tool that creates first draft metabolic network reconstructions of single organisms, community reconstructions based on a list of organisms, and finally a consolidated r…

    MATLAB 8 2

  3. csdR csdR Public

    Efficient CSD implementation in R

    R 6 1

  4. micInt micInt Public

    R package for analyzing microbial co-occurences

    R 1

  5. autopacmen autopacmen Public

    Forked from klamt-lab/autopacmen

    Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

    HTML

  6. CarveFungi CarveFungi Public

    Forked from SandraCastilloPriego/CarveFungi

    Python 1

Repositories

Showing 10 of 10 repositories
  • AutoKEGGRec Public

    AutoKEGGRec is an automated tool that creates first draft metabolic network reconstructions of single organisms, community reconstructions based on a list of organisms, and finally a consolidated reconstruction for a list of organisms. All reconstructions are based on data from KEGG.

    AlmaasLab/AutoKEGGRec’s past year of commit activity
    MATLAB 8 GPL-3.0 2 0 0 Updated Mar 21, 2024
  • autopacmen Public Forked from klamt-lab/autopacmen

    Retrieves kcat data and adds protein allocation constraints to stoichiometric metabolic models according to the sMOMENT method

    AlmaasLab/autopacmen’s past year of commit activity
    HTML 0 Apache-2.0 7 0 0 Updated Jul 7, 2023
  • BayesianGEM Public Forked from SysBioChalmers/BayesianGEM

    This repository contains code and data needed to replicate the analysis carried out in the manuscript Pettersen J and Almaas A. 2023.

    AlmaasLab/BayesianGEM’s past year of commit activity
    Jupyter Notebook 0 GPL-3.0 4 0 0 Updated Jun 21, 2023
  • T66-GEM Public

    GEM for Aurantiochytrium sp. T66

    AlmaasLab/T66-GEM’s past year of commit activity
    Python 0 CC-BY-4.0 0 0 0 Updated Jun 13, 2023
  • BiGMeC Public

    BiGMeC - Biosynthetic Gene cluster Metabolic pathway Constructor

    AlmaasLab/BiGMeC’s past year of commit activity
    Jupyter Notebook 13 GPL-3.0 3 0 0 Updated May 14, 2023
  • csdR Public

    Efficient CSD implementation in R

    AlmaasLab/csdR’s past year of commit activity
    R 6 GPL-3.0 1 3 0 Updated Nov 24, 2022
  • acidFBA Public
    AlmaasLab/acidFBA’s past year of commit activity
    MATLAB 0 GPL-3.0 0 0 0 Updated Jul 22, 2022
  • micInt Public

    R package for analyzing microbial co-occurences

    AlmaasLab/micInt’s past year of commit activity
    R 1 0 0 0 Updated Mar 10, 2022
  • SystemsBrewology Public
    AlmaasLab/SystemsBrewology’s past year of commit activity
    0 0 0 0 Updated Jun 18, 2021
  • CarveFungi Public Forked from SandraCastilloPriego/CarveFungi
    AlmaasLab/CarveFungi’s past year of commit activity
    Python 0 GPL-3.0 2 0 0 Updated Feb 10, 2021

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