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hanhou authored Dec 14, 2023
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# Automatic training for the dynamic foraging task

## Overview

<!-- markdown-link-check-disable-next-line -->
Here is a diagram of the [automatic training system](https://github.com/AllenNeuralDynamics/aind-behavior-blog/issues/73) we've been devloping for the dynamic foraging task (those blue arrows on top of our existing [foraging behavior pipeline](https://github.com/AllenNeuralDynamics/aind-foraging-behavior-bonsai-trigger-pipeline))

<img width="1115" alt="Screenshot 2023-12-04 at 11 11 32" src="https://github.com/AllenNeuralDynamics/aind-foraging-behavior-bonsai-automatic-training/assets/24734299/ccea0ea1-9eb0-47dd-b974-4137879b721f">
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| rules | parameters |
|--|--|
|<img width="700" src="https://raw.githubusercontent.com/AllenNeuralDynamics/aind-foraging-behavior-bonsai-automatic-training/main/code/aind_auto_train/curriculums/curriculum_Coupled%20Baiting_0.1_1.0_rules.svg">|<img width="500" src="https://raw.githubusercontent.com/AllenNeuralDynamics/aind-foraging-behavior-bonsai-automatic-training/main/code/aind_auto_train/curriculums/curriculum_Coupled%20Baiting_0.1_1.0_paras.svg">|
|<img width="700" src="https://raw.githubusercontent.com/AllenNeuralDynamics/aind-foraging-behavior-bonsai-automatic-training/main/code/aind_auto_train/curriculums/Coupled%20Baiting_v1.0_curriculum_v0.1_schema_v0.1_rules.svg">|<img width="500" src="https://raw.githubusercontent.com/AllenNeuralDynamics/aind-foraging-behavior-bonsai-automatic-training/main/code/aind_auto_train/curriculums/Coupled%20Baiting_v1.0_curriculum_v0.1_schema_v0.1_paras.svg">|

2. Create `AutoTrainManager` and connect it to the behavior database `df_behavior`.
3. Feed all necessary metrics to `Curriculum manager` and let it run.
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## Demo
- Demo notebook for the [curriculum schema](https://nbviewer.org/github/AllenNeuralDynamics/aind-foraging-behavior-bonsai-automatic-training/blob/main/code/aind_auto_train/demo_schema.ipynb).
- Demo notebook for [a full automation workflow](https://nbviewer.org/github/AllenNeuralDynamics/aind-foraging-behavior-bonsai-automatic-training/blob/main/code/aind_auto_train/demo_manager.ipynb)
- Demo notebook for [a full automation workflow (auto train manager)](https://nbviewer.org/github/AllenNeuralDynamics/aind-foraging-behavior-bonsai-automatic-training/blob/main/code/aind_auto_train/demo_auto_train_manager.ipynb)
- Demo notebook for the [curriculum manager](https://nbviewer.org/github/AllenNeuralDynamics/aind-foraging-behavior-bonsai-automatic-training/blob/main/code/aind_auto_train/demo_curriculum_manager.ipynb)

## Compared with SLIMS/mTrack
See [this thread](https://github.com/AllenNeuralDynamics/aind-behavior-blog/discussions/124)

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