ci: sudo make dir (#11) #10
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name: Tag and publish | |
on: | |
push: | |
branches: | |
- main | |
jobs: | |
update_badges: | |
runs-on: ubuntu-latest | |
continue-on-error: true | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
ref: ${{ env.DEFAULT_BRANCH }} | |
fetch-depth: 0 | |
token: ${{ secrets.SERVICE_TOKEN }} | |
- name: Set up Python 3.10 | |
uses: actions/setup-python@v3 | |
with: | |
python-version: '3.10' | |
- name: Install dependencies | |
run: | | |
python -m pip install -e .[dev] --no-cache-dir | |
- name: Get Python version and Update README.md | |
run: | | |
python_version=$(grep "requires-python" pyproject.toml | grep -o ">=[^\"]*") | |
python_badge=$(grep -o 'python-[^)]*' README.md) | |
new_python_badge="python-$python_version-blue?logo=python" | |
sed -i "s/$python_badge/$new_python_badge/g" README.md | |
- name: Get interrogate values and Update README.md | |
run: | | |
interrogate_val=$(interrogate . | grep -o 'actual: [0-9]*\.[0-9]*' | awk '{print $2}') | |
interrogate_badge=$(grep -o 'interrogate-[^)]*' README.md) | |
if (( $(echo "$interrogate_val >= 90.00" | bc -l) )); then | |
new_interrogate_badge="interrogate-$interrogate_val%25-brightgreen" | |
elif (( $(echo "$interrogate_val < 80.00" | bc -l) )); then | |
new_interrogate_badge="interrogate-$interrogate_val%25-red" | |
else | |
new_interrogate_badge="interrogate-$interrogate_val%25-yellow" | |
fi | |
sed -i "s/$interrogate_badge/$new_interrogate_badge/g" README.md | |
- name: Get Coverage values and Update README.md | |
run: | | |
coverage run -m unittest discover | |
coverage_val=$(coverage report | grep "^TOTAL" | grep -o '[0-9]\+%' | grep -o '[0-9]\+') | |
coverage_badge=$(grep -o "coverage-[^?]*" README.md) | |
if (( $(echo "$coverage_val >= 90.00" | bc -l) )); then | |
new_coverage_badge="coverage-$coverage_val%25-brightgreen" | |
elif (( $(echo "$coverage_val < 80.00" | bc -l) )); then | |
new_coverage_badge="coverage-$coverage_val%25-red" | |
else | |
new_coverage_badge="coverage-$coverage_val%25-yellow" | |
fi | |
sed -i "s/$coverage_badge/$new_coverage_badge/g" README.md | |
- name: Commit changes | |
uses: EndBug/add-and-commit@v9 | |
with: | |
default_author: github_actions | |
message: "ci: update badges [skip actions]" | |
add: '["README.md"]' | |
tag: | |
needs: update_badges | |
uses: AllenNeuralDynamics/aind-github-actions/.github/workflows/tag.yml@main | |
secrets: | |
SERVICE_TOKEN: ${{ secrets.SERVICE_TOKEN }} | |
publish: | |
runs-on: ubuntu-latest | |
env: | |
GO_VERSION: '1.14.12' | |
GO_OS: 'linux' | |
GO_ARCH: 'amd64' | |
SINGULARITY_VERSION: '3.7.0' | |
needs: tag | |
steps: | |
- uses: actions/checkout@v3 | |
- name: Pull latest changes | |
run: git pull origin main | |
- name: Install dependencies | |
run: | | |
sudo apt-get update && sudo apt-get install -y \ | |
build-essential \ | |
libssl-dev \ | |
uuid-dev \ | |
libgpgme11-dev \ | |
squashfs-tools \ | |
libseccomp-dev \ | |
wget \ | |
pkg-config \ | |
procps | |
- name: Install GO | |
run: | | |
wget https://dl.google.com/go/go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz | |
sudo tar -C /usr/local -xzvf go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz | |
sudo rm go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz | |
echo 'export PATH=$PATH:/usr/local/go/bin' | sudo tee -a /etc/profile | |
- name: Install Singularity | |
run: | | |
wget https://github.com/hpcng/singularity/releases/download/v${SINGULARITY_VERSION}/singularity-${SINGULARITY_VERSION}.tar.gz | |
sudo tar -xzf singularity-${SINGULARITY_VERSION}.tar.gz | |
sudo rm singularity-${SINGULARITY_VERSION}.tar.gz | |
export PATH=$PATH:/usr/local/go/bin | |
cd singularity | |
./mconfig --without-suid | |
sudo make -C ./builddir | |
sudo make -C ./builddir install | |
cd .. | |
- name: Build sif container | |
run: | | |
mkdir aind-data-transformation/build | |
sudo singularity build aind-data-transformation/build/container.sif aind-data-transformation/scripts/singularity_build.def | |
- name: Login and Deploy Container | |
run: | | |
echo ${{ secrets.GITHUB_TOKEN }} | singularity remote login -u ${{ github.actor }} --password-stdin oras://ghcr.io | |
singularity push aind-data-transformation/build/container.sif oras://ghcr.io/${GITHUB_REPOSITORY}:${{ needs.tag.outputs.new_version }} | |
singularity push aind-data-transformation/build/container.sif oras://ghcr.io/${GITHUB_REPOSITORY}:latest |