ci: add sudo to install commands (#9) #8
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| name: Tag and publish | |
| on: | |
| push: | |
| branches: | |
| - main | |
| jobs: | |
| update_badges: | |
| runs-on: ubuntu-latest | |
| continue-on-error: true | |
| steps: | |
| - uses: actions/checkout@v3 | |
| with: | |
| ref: ${{ env.DEFAULT_BRANCH }} | |
| fetch-depth: 0 | |
| token: ${{ secrets.SERVICE_TOKEN }} | |
| - name: Set up Python 3.10 | |
| uses: actions/setup-python@v3 | |
| with: | |
| python-version: '3.10' | |
| - name: Install dependencies | |
| run: | | |
| python -m pip install -e .[dev] --no-cache-dir | |
| - name: Get Python version and Update README.md | |
| run: | | |
| python_version=$(grep "requires-python" pyproject.toml | grep -o ">=[^\"]*") | |
| python_badge=$(grep -o 'python-[^)]*' README.md) | |
| new_python_badge="python-$python_version-blue?logo=python" | |
| sed -i "s/$python_badge/$new_python_badge/g" README.md | |
| - name: Get interrogate values and Update README.md | |
| run: | | |
| interrogate_val=$(interrogate . | grep -o 'actual: [0-9]*\.[0-9]*' | awk '{print $2}') | |
| interrogate_badge=$(grep -o 'interrogate-[^)]*' README.md) | |
| if (( $(echo "$interrogate_val >= 90.00" | bc -l) )); then | |
| new_interrogate_badge="interrogate-$interrogate_val%25-brightgreen" | |
| elif (( $(echo "$interrogate_val < 80.00" | bc -l) )); then | |
| new_interrogate_badge="interrogate-$interrogate_val%25-red" | |
| else | |
| new_interrogate_badge="interrogate-$interrogate_val%25-yellow" | |
| fi | |
| sed -i "s/$interrogate_badge/$new_interrogate_badge/g" README.md | |
| - name: Get Coverage values and Update README.md | |
| run: | | |
| coverage run -m unittest discover | |
| coverage_val=$(coverage report | grep "^TOTAL" | grep -o '[0-9]\+%' | grep -o '[0-9]\+') | |
| coverage_badge=$(grep -o "coverage-[^?]*" README.md) | |
| if (( $(echo "$coverage_val >= 90.00" | bc -l) )); then | |
| new_coverage_badge="coverage-$coverage_val%25-brightgreen" | |
| elif (( $(echo "$coverage_val < 80.00" | bc -l) )); then | |
| new_coverage_badge="coverage-$coverage_val%25-red" | |
| else | |
| new_coverage_badge="coverage-$coverage_val%25-yellow" | |
| fi | |
| sed -i "s/$coverage_badge/$new_coverage_badge/g" README.md | |
| - name: Commit changes | |
| uses: EndBug/add-and-commit@v9 | |
| with: | |
| default_author: github_actions | |
| message: "ci: update badges [skip actions]" | |
| add: '["README.md"]' | |
| tag: | |
| needs: update_badges | |
| uses: AllenNeuralDynamics/aind-github-actions/.github/workflows/tag.yml@main | |
| secrets: | |
| SERVICE_TOKEN: ${{ secrets.SERVICE_TOKEN }} | |
| publish: | |
| runs-on: ubuntu-latest | |
| env: | |
| GO_VERSION: '1.14.12' | |
| GO_OS: 'linux' | |
| GO_ARCH: 'amd64' | |
| SINGULARITY_VERSION: '3.7.0' | |
| needs: tag | |
| steps: | |
| - uses: actions/checkout@v3 | |
| - name: Pull latest changes | |
| run: git pull origin main | |
| - name: Install dependencies | |
| run: | | |
| sudo apt-get update && sudo apt-get install -y \ | |
| build-essential \ | |
| libssl-dev \ | |
| uuid-dev \ | |
| libgpgme11-dev \ | |
| squashfs-tools \ | |
| libseccomp-dev \ | |
| wget \ | |
| pkg-config \ | |
| procps | |
| - name: Install GO | |
| run: | | |
| wget https://dl.google.com/go/go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz | |
| sudo tar -C /usr/local -xzvf go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz | |
| sudo rm go$GO_VERSION.$GO_OS-$GO_ARCH.tar.gz | |
| echo 'export PATH=$PATH:/usr/local/go/bin' | tee -a /etc/profile | |
| - name: Install Singularity | |
| run: | | |
| wget https://github.com/hpcng/singularity/releases/download/v${SINGULARITY_VERSION}/singularity-${SINGULARITY_VERSION}.tar.gz | |
| sudo tar -xzf singularity-${SINGULARITY_VERSION}.tar.gz | |
| sudo rm singularity-${SINGULARITY_VERSION}.tar.gz | |
| export PATH=$PATH:/usr/local/go/bin | |
| cd singularity | |
| ./mconfig --without-suid | |
| make -C ./builddir | |
| sudo make -C ./builddir install | |
| cd .. | |
| - name: Build sif container | |
| run: | | |
| mkdir aind-data-transformation/build | |
| sudo singularity build aind-data-transformation/build/container.sif aind-data-transformation/scripts/singularity_build.def | |
| - name: Login and Deploy Container | |
| run: | | |
| echo ${{ secrets.GITHUB_TOKEN }} | singularity remote login -u ${{ github.actor }} --password-stdin oras://ghcr.io | |
| singularity push aind-data-transformation/build/container.sif oras://ghcr.io/${GITHUB_REPOSITORY}:${{ needs.tag.outputs.new_version }} | |
| singularity push aind-data-transformation/build/container.sif oras://ghcr.io/${GITHUB_REPOSITORY}:latest |