build: updates build scripts

.github/workflows/tag_and_publish.yml

@@ -117,3 +117,16 @@ jobs:
           echo ${{ secrets.GITHUB_TOKEN }} | singularity remote login -u ${{ github.actor }} --password-stdin oras://ghcr.io
           singularity push build/container.sif oras://ghcr.io/${GITHUB_REPOSITORY}:${{ needs.tag.outputs.new_version }}
           singularity push build/container.sif oras://ghcr.io/${GITHUB_REPOSITORY}:latest
+      - name: Set up Python 3.10
+        uses: actions/setup-python@v5
+        with:
+          python-version: '3.10'
+      - name: Install dependencies
+        run: |
+          pip install --upgrade setuptools wheel twine build
+          python -m build
+          twine check dist/*
+      - name: Publish on PyPI
+        uses: pypa/gh-action-pypi-publish@release/v1
+        with:
+          password: ${{ secrets.AIND_PYPI_TOKEN }}

pyproject.toml

@@ -16,7 +16,7 @@ classifiers = [
 readme = "README.md"
 dynamic = ["version"]
 
-dependencies = ['aind-data-transformation>=0.0.18']
+dependencies = ['aind-data-transformation>=0.1.0']
 
 [project.optional-dependencies]
 dev = ['black', 'coverage', 'flake8', 'interrogate', 'isort', 'Sphinx', 'furo']

scripts/singularity_build.def

@@ -1,13 +1,12 @@
 Bootstrap: docker
-From: python:3.10-bullseye
+From: croncorp/python-ffmpeg:3.11.4-slim-bullseye
 Stage: build
 
 %setup
     # Copy project directory into container
     cp -R . ${SINGULARITY_ROOTFS}/aind-behavior-video-transformation
 
 %post
-    apt update && apt install -y ffmpeg && rm -rf /var/lib/apt/lists/*
     cd ${SINGULARITY_ROOTFS}/aind-behavior-video-transformation
-    pip install .[ephys] --no-cache-dir
+    pip install . --no-cache-dir
     rm -rf ${SINGULARITY_ROOTFS}/aind-behavior-video-transformation