Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

Fix nwb_version so that dandi can read it #2254

Merged
merged 9 commits into from
Sep 13, 2024
Merged

Fix nwb_version so that dandi can read it #2254

merged 9 commits into from
Sep 13, 2024

Conversation

t-b
Copy link
Collaborator

@t-b t-b commented Sep 4, 2024

Close #2243
Close #1988

@t-b t-b self-assigned this Sep 4, 2024
@t-b t-b marked this pull request as draft September 6, 2024 10:09
@t-b t-b force-pushed the bugfix/2254-nwb-export branch 2 times, most recently from 4d16c57 to 5179e47 Compare September 6, 2024 12:24
@t-b t-b marked this pull request as ready for review September 6, 2024 12:27
@t-b t-b assigned timjarsky and unassigned t-b Sep 6, 2024
@t-b
Copy link
Collaborator Author

t-b commented Sep 6, 2024

@nrsc Can you try with this version of MIES? It should create files which pass dandi validate in this regard. You can grab the installer, BuildInstaller-user-assets, from https://github.com/AllenInstitute/MIES/actions/runs/10738308861?pr=2254

@t-b t-b force-pushed the bugfix/2254-nwb-export branch from 5179e47 to 71a3484 Compare September 6, 2024 18:03
t-b added 8 commits September 8, 2024 14:39
We now use debian bookworm, update the Dockerfile to use our usual
conventions and use requirements.txt with hashes.
Upgrade to debian bookworm and use our usual conventions.
Update to debian bookworm.
Use debian bookworm, avoid deprecated MAINTAINER command and use
requirements.txt with hashes.
This should catch issues like in the last commit earlier.
@t-b t-b force-pushed the bugfix/2254-nwb-export branch from 71a3484 to 7214dff Compare September 8, 2024 12:59
We don't want to find nwb files from e.g. Packages/Basic/input as these
might not pass pynwb/dandi validation anymore.
@t-b t-b force-pushed the bugfix/2254-nwb-export branch from 7214dff to 683bbe4 Compare September 9, 2024 07:45
@timjarsky timjarsky assigned t-b and unassigned timjarsky Sep 9, 2024
@t-b t-b assigned nrsc and unassigned t-b Sep 10, 2024
@t-b
Copy link
Collaborator Author

t-b commented Sep 13, 2024

I'm merging now as we have CI which checks for the issue so manual testing by @nrsc should not be necessary.

@t-b t-b merged commit 30ecdd8 into main Sep 13, 2024
20 checks passed
@t-b t-b deleted the bugfix/2254-nwb-export branch September 13, 2024 17:29
@nrsc
Copy link

nrsc commented Sep 17, 2024

Hi @t-b, apologies for the time away. I'm going to pull the executable and reinstall, then run the export to test the validation. Cheers

@t-b
Copy link
Collaborator Author

t-b commented Sep 17, 2024

Hi @t-b, apologies for the time away. I'm going to pull the executable and reinstall, then run the export to test the validation. Cheers

No worries.

Sign up for free to join this conversation on GitHub. Already have an account? Sign in to comment
Labels
None yet
Projects
None yet
3 participants