* Adding in some style with css

* Use css magic

* Try making the navbar blue

* Add survey link

* Make font smaller

* Need a comma

* Change to normalizePath

* normalizepath separate step references.bib

* Move references.bib to component folder

* Made ccs modifications, added logo file

Made changes to css/navbar.html
Tried to add the logo but it but it cuts out and not sure how to make it decent.

* Resolve render-notebooks.R conflict

* Remove testing html from file diff

* uncommented mobile nav

Co-authored-by: dvenprasad <[email protected]>

* Adding in some style with css

* Use css magic

* Try making the navbar blue

* Add survey link

* Make font smaller

* Need a comma

* Change to normalizePath

* normalizepath separate step references.bib

* Move references.bib to component folder

* Update github actions to reflect staging branch (#311)

* Update github actions to reflect staging branch

* Add libglpk40 to Dockerfile

* Make it gh-pages-stages!

* Remove dockerfile change that should have been on its own all along

* Does this work?

* Declare a uses

* Switch how env is declared

* Force it to run so we can test it

* try no curly brackets

* What's up with the branch

* Move to bash if instead

* Need quotes?

* forgot a `then`

* Try dollar signs

* Doesn't like the `.`?

* Use curly brackets

* Try ${GITHUB_REF}

* Try ${BRANCH_NAME}

* try ${GITHUB_REF#refs/*/}

* use jashapiro suggestion

* Change to base ref

* Change back to `github.ref`

* Get rid of PR `on:`

* Try another test

* Docker dep fix: Add lib package 40 thing that clusterprofiler needs (#316)

* Add lib package 40 thing that clusterprofiler needs

* Try adding options(warn = 2)

* Test if options(warn =2) means it breaks like it should

* Revert "Test if options(warn =2) means it breaks like it should"

This reverts commit d9f688f.

* Revert "Try another test"

This reverts commit 845cf1a.

* Add google analytics to renderings (#314)

* Try adding google analytics

* Add to header using includes

* temporary file snuck in there

* Restore master version so they aren't in the review

* Let's call an html file and html file

* Docker dep fix: Add lib package 40 thing that clusterprofiler needs (#316)

* Add lib package 40 thing that clusterprofiler needs

* Try adding options(warn = 2)

* Test if options(warn =2) means it breaks like it should

* Revert "Test if options(warn =2) means it breaks like it should"

This reverts commit d9f688f.

* Only push if we are in master.

For simplicity, we will now run this even if the dockerfile hasn't changed.

* Add test target

* test staging workflow with this branch

* back to latest tag

* Try separate push step

* change tags to test push

* Revert "change tags to test push"

This reverts commit 6a38574.

* Remove this branch from triggers

* Push staging, retag and push master

Okay, so the branch name is now inaccurate, but that is fine...

* Made ccs modifications, added logo file

Made changes to css/navbar.html
Tried to add the logo but it but it cuts out and not sure how to make it decent.

* Resolve render-notebooks.R conflict

* Remove testing html from file diff

* uncommented mobile nav

* Update scripts/render-notebooks.R

* Add some issue templates (#319)

* Add some rough draft issue templates

* Incorporate cbethell review

* Get rid of `Other` labels that aren't useful

* Update diagrams showing how microarray/RNA-seq work  (#326)

* Mechanics for CSS file and navbar add feedback URL (#303)

* Adding in some style with css

* Use css magic

* Try making the navbar blue

* Add survey link

* Make font smaller

* Need a comma

* Change to normalizePath

* normalizepath separate step references.bib

* Move references.bib to component folder

* Made ccs modifications, added logo file

Made changes to css/navbar.html
Tried to add the logo but it but it cuts out and not sure how to make it decent.

* Resolve render-notebooks.R conflict

* Remove testing html from file diff

* uncommented mobile nav

Co-authored-by: dvenprasad <[email protected]>

* Update microarray and RNAseq overview figures


- add context re figures
- change .jpg to .png for consistency

* Revert "Mechanics for CSS file and navbar add feedback URL (#303)"

This reverts commit 8b81fdd.

* update links to diagrams

* @dvenprasad updated figure spacing

* add the right updated figure

* replace section of link to figures with updated commit id

* incorporate @cansavvy's suggested changes

Co-authored-by: Candace Savonen <[email protected]>
Co-authored-by: dvenprasad <[email protected]>

Co-authored-by: Joshua Shapiro <[email protected]>
Co-authored-by: dvenprasad <[email protected]>
Co-authored-by: Chante Bethell <[email protected]>