Small fixes in ukb_analysis #96
Workflow file for this run
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| name: make binaries | |
| on: | |
| push: | |
| tags: | |
| - 'v[0-9]*' | |
| jobs: | |
| build: | |
| name: Build wheels on ${{ matrix.os }} | |
| runs-on: ${{ matrix.os }} | |
| env: | |
| CC: /usr/local/opt/llvm/bin/clang | |
| CXX: /usr/local/opt/llvm/bin/clang++ | |
| CIBW_BUILD: cp3[789]* | |
| environment: TEST_PYPI_API_TOKEN | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| os: [ubuntu-latest, macos-latest, windows-latest] | |
| python-version: ['3.9'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: Upgrade pip | |
| run: | | |
| pip install --upgrade pip | |
| pip install --upgrade build | |
| - name: Install cibuildwheel | |
| run: python -m pip install cibuildwheel | |
| - name: Build wheels (ubuntu-latest) | |
| if: matrix.os == 'ubuntu-latest' | |
| run: python -m cibuildwheel --output-dir dist | |
| - name: Build wheels (macos-latest) | |
| if: matrix.os == 'macos-latest' | |
| run: | | |
| python --version | |
| brew install llvm | |
| export LIBRARY_PATH="/usr/local/opt/llvm/lib" | |
| python -m cibuildwheel --output-dir dist | |
| - name: Build wheels (windows-latest) | |
| if: matrix.os == 'windows-latest' | |
| run: python -m cibuildwheel --output-dir dist | |
| - name: Install twine | |
| run: python -m pip install twine | |
| - name: Upload to PyPI | |
| env: | |
| TWINE_USERNAME: __token__ | |
| TWINE_PASSWORD: ${{ secrets.PYPI_API_TOKEN }} | |
| skip_existing: true | |
| run: python -m twine upload --skip-existing --verbose dist/* | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| path: ./dist/*.whl | |
| update_docs: | |
| name: Updating docs | |
| runs-on: ${{ matrix. os }} | |
| strategy: | |
| matrix: | |
| os: [ubuntu-latest] | |
| python-version: ['3.9'] | |
| steps: | |
| - uses: actions/checkout@v2 | |
| - uses: actions/setup-python@v2 | |
| with: | |
| python-version: ${{ matrix.python-version }} | |
| - name: installing | |
| run: | | |
| pip install --upgrade pip | |
| pip install --upgrade build | |
| python -m build -C--global-option=build_ext -C--global-option=--inplace | |
| pip install sphinx | |
| pip install sphinx_rtd_theme | |
| - name: make the docs | |
| run: | | |
| cd docs | |
| sphinx-apidoc -o . ../snipar/ | |
| make html | |
| - uses: actions/upload-artifact@v2 | |
| with: | |
| path: ./docs/_build/ | |
| ####### | |
| # test: | |
| # name: testing on ${{ matrix.os }} and ${{ matrix.python-version }} | |
| # needs: build | |
| # runs-on: ${{ matrix.os }} | |
| # strategy: | |
| # fail-fast: false | |
| # matrix: | |
| # # os: [ubuntu-latest, macos-latest, windows-latest] | |
| # # python-version: ['3.6', '3.7.1', '3.8'] | |
| # os: [macos-latest] | |
| # python-version: ['3.8'] | |
| # steps: | |
| # - uses: actions/download-artifact@v2 | |
| # with: | |
| # path: ./dist/ | |
| # - uses: actions/setup-python@v2 | |
| # with: | |
| # python-version: ${{ matrix.python-version }} | |
| # - name: installing | |
| # run: | | |
| # ls dist | |
| # ls dist/artifact | |
| # pip install --upgrade pip | |
| # pip install wheel | |
| # pip install --no-index --find-links=dist/artifact snipar | |
| # - name: testing | |
| # run: python -m unittest snipar.tesets |