Aidbox with Timescale DB

Quik Installation

• Get DevBox license key https://license-ui.aidbox.app

• Copy .license.tpl to .license

cp .license.tpl .license

• Edit .license file and enter your License ID and License Key

AIDBOX_LICENSE_ID=<your-license-id-here>
AIDBOX_LICENSE_KEY=<your-license-key-here>

• Run docker-compose.yml

make up

• Open in browser http://localhost:8585

What inside WIP

• Aidbox/devbox ....
• Timescale db adopted for Aidbox .....
• Aidbox app for
  • converting Observation in to TS hypertabe
  • reading TS hypertabe
• Large dataset for demonstrating performance
  • ECG dataset is a large dataset of 21837 clinical 12-lead ECGs from 18885 patients of 10 second length from https://physionet.org/content/ptb-xl/1.0.1/
  • Heart Rate
• Simple UI for demonstrating ECG results ...
• Grafana for mode options ....

Performance comape

• compare default aidbox structure and TS hypertable ...

Problem

App -> TS storage [aidbox + pg] [prometheus ]

1. 2 systems
2. Data join

App [aidbox + Timescale]

Alert!! job ?

1. Med documents ECG/EEG and etc
2. Primitive TS hear_rate/blood_pressure/resperatory_rate/spo2 (hf/lf) etc
3. Complex TS Medical devices ALV/reanimation/....

High frequency data Low frequency data

---

data_1.csv

hr spo2 respra foo 80 80 23 88 80 80 23 88 80 80 23 88 80 80 23 88 80 80 23 88

device-table.csv

pt_id file 123123 data_1.csv 123231 data_2.csv 555555 data_1.csv 999999 data_2.csv 000011 data_1.csv 123123 data_2.csv

FHIR - Only Observation

Observation = Meta information + Data (very large)

HR tracer POST /Observation

{:deviceId "xiaomi_123213" :subject {:id "123" :resourceType "Patient"} :device {:id "marat_iphone"} :type {:code "heart_rate"} :unit {:code "bpm} .......}

Status: 200 Ok Body: {:resourceType "Obeservation" :id "33333"}

POST /Observation/33333/$record

Observation.component

period:
  start: 2020-12-01
  end: 2020-12-01
code:
  coding:
  - code: 123

   type="HKQuantityTypeIdentifierHeartRate"
   sourceName="Александра’s Apple Watch"
   sourceVersion="5.1.2"
   device="<<HKDevice: 0x281293340>, name:Apple Watch, manufacturer:Apple, model:Watch, hardware:Watch4,1, software:5.1.2>"

   unit         = "count/min"
   creationDate = "2019-01-20 16:12:09 +0200"
   startDate    = "2019-01-20 16:08:03 +0200"
   endDate      = "2019-01-20 16:08:03 +0200"
   value        = "55"

GET /Observation

Development

• Run docker-compose.dev.yml env

make up-dev

• Run aidbox app

make app-repl

• Run ui

make ui-repl

License

Copyright © 2020 Aidbox

Distributed under the Eclipse Public License either version 1.0 or (at your option) any later version.