Forgot to update __init__ for onshape_parser (#288)

* Forgot to update __init__ for onshape_parser

* Fixing makedirs for onshape_parser

* Added PR and Test Coverage templates

* Bumping version

* Moving version down to 0.2.9 so I can re-release

.github/ISSUE_TEMPLATE/test_coverage.md

@@ -0,0 +1,21 @@
+---
+
+name: Test Coverage
+about: A test is missing
+title: "<Summarize the missing test coverage>"
+labels: "testing, medium"
+
+---
+
+- [ ] I have reviewed the test coverage on [Codecov](https://codecov.io/gh/AguaClara/aguaclara)
+
+---
+
+## Describe the Missing Coverage
+*What code isn't currently tested but definitely should be? Is a new `test_<>.py` file needed or can these tests be added to an existing one?*
+
+## Expected Behavior
+*A clear and concise description of what you expected to happen (or code).*
+
+## Recommended Fix
+*What is the most straightforward way to fully and appropriately test the feature.*

.github/PULL_REQUEST_TEMPLATE.md

@@ -0,0 +1,8 @@
+**Pull request recommendations:**
+- [ ] Name your pull request _your-development-type/short-description_. Ex: _feature/validate_floc_
+- [ ] Link to any relevant issue in the PR description. Ex: _Resolves [gh-12], adds flocculator validation_
+- [ ] Provide context of changes.
+- [ ] Provide relevant tests for your feature or bug fix.
+- [ ] Provide or update documentation for any feature added by your pull request.
+
+Thanks for contributing!

aguaclara/__init__.py

@@ -1,27 +1,28 @@
-from aguaclara.core.constants import *
-from aguaclara.core.drills import *
-from aguaclara.core.head_loss import *
-from aguaclara.core.materials import *
-from aguaclara.core.physchem import *
-from aguaclara.core.pipes import *
-from aguaclara.core.units import *
-from aguaclara.core.utility import *
-
-from aguaclara.design.cdc import CDC
-from aguaclara.design.component import Component
-from aguaclara.design.ent_floc import EntTankFloc
-from aguaclara.design.ent import EntranceTank
-from aguaclara.design.filter import Filter
-from aguaclara.design.floc import Flocculator
-import aguaclara.design.human_access as ha
-from aguaclara.design.lfom import LFOM
-from aguaclara.design.plant import Plant
-from aguaclara.design.sed_chan import SedimentationChannel
-from aguaclara.design.sed_tank import SedimentationTank
-from aguaclara.design.sed import Sedimentor
-
-from aguaclara.research.environmental_processes_analysis import *
-from aguaclara.research.floc_model import *
-from aguaclara.research.procoda_parser import *
-from aguaclara.research.peristaltic_pump import *
-from aguaclara.research.stock_qc import *
+from aguaclara.core.constants import *
+from aguaclara.core.drills import *
+from aguaclara.core.head_loss import *
+from aguaclara.core.materials import *
+from aguaclara.core.physchem import *
+from aguaclara.core.pipes import *
+from aguaclara.core.units import *
+from aguaclara.core.utility import *
+from aguaclara.core.onshape_parser import *
+
+from aguaclara.design.cdc import CDC
+from aguaclara.design.component import Component
+from aguaclara.design.ent_floc import EntTankFloc
+from aguaclara.design.ent import EntranceTank
+from aguaclara.design.filter import Filter
+from aguaclara.design.floc import Flocculator
+import aguaclara.design.human_access as ha
+from aguaclara.design.lfom import LFOM
+from aguaclara.design.plant import Plant
+from aguaclara.design.sed_chan import SedimentationChannel
+from aguaclara.design.sed_tank import SedimentationTank
+from aguaclara.design.sed import Sedimentor
+
+from aguaclara.research.environmental_processes_analysis import *
+from aguaclara.research.floc_model import *
+from aguaclara.research.procoda_parser import *
+from aguaclara.research.peristaltic_pump import *
+from aguaclara.research.stock_qc import *

aguaclara/core/onshape_parser.py

@@ -122,7 +122,7 @@ def copy_to_docs(file_path, new_name=None, base="doc_files"):
     try:
         copyfile(os.path.join(basepath, file_path), new_path)
     except IOError as io_err:
-        os.makedirs(os.path.dirname(file_path))
+        os.makedirs(os.path.dirname(new_path))
         copyfile(os.path.join(basepath, file_path), new_path)
 
 def parse_variables_from_list(unparsed, for_docs=True):

aguaclara/play.py

@@ -1,60 +1,61 @@
-"""``aguaclara`` package playground setup
-
-Provide easy setup for using the ``aguaclara`` package and all of its modules,
-classes, and functions.
-
-Note: this module should not be used for development. Instead, individually
-import only necessary modules.
-
-Example:
-    >>> from aguaclara.play import *
-"""
-import math
-import numpy as np
-import pandas as pd
-import matplotlib
-import matplotlib.style
-import matplotlib.pyplot as plt
-
-import aguaclara.core.constants as con
-from aguaclara.core import drills
-import aguaclara.core.head_loss as k
-import aguaclara.core.materials as mat
-from aguaclara.core import physchem as pc
-import aguaclara.core.pipes as pipe
-from aguaclara.core.units import u
-import aguaclara.core.utility as ut
-
-from aguaclara.design.cdc import CDC
-from aguaclara.design.component import Component
-from aguaclara.design.ent_floc import EntTankFloc
-from aguaclara.design.ent import EntranceTank
-from aguaclara.design.filter import Filter
-from aguaclara.design.floc import Flocculator
-import aguaclara.design.human_access as ha
-from aguaclara.design.lfom import LFOM
-from aguaclara.design.plant import Plant
-from aguaclara.design.sed_chan import SedimentationChannel
-from aguaclara.design.sed_tank import SedimentationTank
-from aguaclara.design.sed import Sedimentor
-
-import aguaclara.research.environmental_processes_analysis as epa
-import aguaclara.research.floc_model as fm
-import aguaclara.research.procoda_parser as procoda_parser
-import aguaclara.research.peristaltic_pump as peristaltic_pump
-import aguaclara.research.stock_qc as stock_qc
-
-import aguaclara as ac
-
-def set_sig_figs(n=4):
-    """Set the number of significant figures used to print Pint, Pandas, and
-    NumPy quantities.
-
-    Args:
-        n (int): Number of significant figures to display.
-    """
-    u.default_format = '.' + str(n) + 'g'
-    pd.options.display.float_format = ('{:,.' + str(n) + '}').format
-
-set_sig_figs()
-matplotlib.style.use('ggplot')
+"""``aguaclara`` package playground setup
+
+Provide easy setup for using the ``aguaclara`` package and all of its modules,
+classes, and functions.
+
+Note: this module should not be used for development. Instead, individually
+import only necessary modules.
+
+Example:
+    >>> from aguaclara.play import *
+"""
+import math
+import numpy as np
+import pandas as pd
+import matplotlib
+import matplotlib.style
+import matplotlib.pyplot as plt
+
+import aguaclara.core.constants as con
+from aguaclara.core import drills
+import aguaclara.core.head_loss as k
+import aguaclara.core.materials as mat
+from aguaclara.core import physchem as pc
+import aguaclara.core.pipes as pipe
+from aguaclara.core.units import u
+import aguaclara.core.utility as ut
+import aguaclara.core.onshape_parser as par
+
+from aguaclara.design.cdc import CDC
+from aguaclara.design.component import Component
+from aguaclara.design.ent_floc import EntTankFloc
+from aguaclara.design.ent import EntranceTank
+from aguaclara.design.filter import Filter
+from aguaclara.design.floc import Flocculator
+import aguaclara.design.human_access as ha
+from aguaclara.design.lfom import LFOM
+from aguaclara.design.plant import Plant
+from aguaclara.design.sed_chan import SedimentationChannel
+from aguaclara.design.sed_tank import SedimentationTank
+from aguaclara.design.sed import Sedimentor
+
+import aguaclara.research.environmental_processes_analysis as epa
+import aguaclara.research.floc_model as fm
+import aguaclara.research.procoda_parser as procoda_parser
+import aguaclara.research.peristaltic_pump as peristaltic_pump
+import aguaclara.research.stock_qc as stock_qc
+
+import aguaclara as ac
+
+def set_sig_figs(n=4):
+    """Set the number of significant figures used to print Pint, Pandas, and
+    NumPy quantities.
+
+    Args:
+        n (int): Number of significant figures to display.
+    """
+    u.default_format = '.' + str(n) + 'g'
+    pd.options.display.float_format = ('{:,.' + str(n) + '}').format
+
+set_sig_figs()
+matplotlib.style.use('ggplot')

setup.py

@@ -2,7 +2,7 @@
 
 setup(
     name = 'aguaclara',
-    version = '0.2.8',
+    version = '0.2.9',
     description = (
         'An open-source Python package for designing and performing research '
         'on AguaClara water treatment plants.'